View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6708_low_29 (Length: 313)
Name: NF6708_low_29
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_29 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 3641001 - 3640689
Alignment:
| Q |
1 |
tcatgatttaacaataaatccagaacaaaaaagataatttcttgaatatcattgccatcaagtctagttctatatgttgaatatacaattatacattatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3641001 |
tcatgatttaacaataaatccagaacaaaaaagataatttcttgaatatcattgccatcaagtctagttctatatgttgaatatacaattatgcattatg |
3640902 |
T |
|
| Q |
101 |
cttttgtcatcaaattgcactgcttgctgccaaccgaagcattttattggtttgtacaagaatgaagtaatttacattttaagtctaccataagctgact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3640901 |
cttttgtcatcaaattgcactgcttgctgccaaccgaagcattttattggtttgtacaagaatgaagtaatttacattttaagtctaccataagctgact |
3640802 |
T |
|
| Q |
201 |
acagaaatatattgatacatgtaactttcaaccttcagagttccattgtagattggtaccactgtagagttacacaacttcttcaatctcctctaagccg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3640801 |
acagaaatatattgatacatgtaactttcaaccttcagagttccattgtagattggtaccactgtagagttacacaacttcatcaatctcctctaagccg |
3640702 |
T |
|
| Q |
301 |
cacataaacttga |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3640701 |
cacataaacttga |
3640689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University