View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6708_low_3 (Length: 639)
Name: NF6708_low_3
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Complemental strand, 28607522 - 28606907
Alignment:
| Q |
1 |
ttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgcatttttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607522 |
ttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgcatttttct |
28607423 |
T |
|
| Q |
101 |
acaaataggaaagctatgatatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagttt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607422 |
acaaataggaaagctatggtatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagttt |
28607323 |
T |
|
| Q |
201 |
cacactttgaataccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaagga |
300 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607322 |
cacactctgaatgtcatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaagga |
28607223 |
T |
|
| Q |
301 |
aagtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaa |
400 |
Q |
| |
|
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607222 |
aagcatcgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaa |
28607123 |
T |
|
| Q |
401 |
tacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607122 |
tacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttg |
28607023 |
T |
|
| Q |
501 |
tgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggt |
600 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
28607022 |
tgtgtgtgag--agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggt |
28606925 |
T |
|
| Q |
601 |
tttccacgttaaatattg |
618 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
28606924 |
ttttcacgttaaatattg |
28606907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Complemental strand, 28612284 - 28611669
Alignment:
| Q |
1 |
ttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgcatttttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28612284 |
ttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgcatttttct |
28612185 |
T |
|
| Q |
101 |
acaaataggaaagctatgatatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagttt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28612184 |
acaaataggaaagctatggtatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagttt |
28612085 |
T |
|
| Q |
201 |
cacactttgaataccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaagga |
300 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28612084 |
cacactctgaatgtcatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaagga |
28611985 |
T |
|
| Q |
301 |
aagtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaa |
400 |
Q |
| |
|
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611984 |
aagcatcgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaa |
28611885 |
T |
|
| Q |
401 |
tacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611884 |
tacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttg |
28611785 |
T |
|
| Q |
501 |
tgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggt |
600 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
28611784 |
tgtgtgtgag--agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggt |
28611687 |
T |
|
| Q |
601 |
tttccacgttaaatattg |
618 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
28611686 |
ttttcacgttaaatattg |
28611669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 307 - 618
Target Start/End: Original strand, 14178646 - 14178955
Alignment:
| Q |
307 |
tgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
406 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178646 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
14178745 |
T |
|
| Q |
407 |
gggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178746 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
14178845 |
T |
|
| Q |
507 |
tgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttcca |
606 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
14178846 |
t--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttcca |
14178943 |
T |
|
| Q |
607 |
cgttaaatattg |
618 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14178944 |
cgttaaatattg |
14178955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 307 - 618
Target Start/End: Original strand, 14173892 - 14174201
Alignment:
| Q |
307 |
tgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
406 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173892 |
tgaagcagaagtgaaaatacaaagtttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
14173991 |
T |
|
| Q |
407 |
gggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173992 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
14174091 |
T |
|
| Q |
507 |
tgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttcca |
606 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
14174092 |
t--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttcca |
14174189 |
T |
|
| Q |
607 |
cgttaaatattg |
618 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14174190 |
cgttaaatattg |
14174201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 308 - 618
Target Start/End: Original strand, 44161543 - 44161848
Alignment:
| Q |
308 |
gaagcagaagtgagaat-acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
406 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161543 |
gaagcagaagtgaaaaacacaaagcttctgtgtgt--agaggtgtgtgagaggaataatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
44161640 |
T |
|
| Q |
407 |
gggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44161641 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtcttacgggaaacactatattgtatctcttgtgtgtg |
44161740 |
T |
|
| Q |
507 |
tgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttcca |
606 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
44161741 |
t--aagagagtggagaga--attgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttcca |
44161836 |
T |
|
| Q |
607 |
cgttaaatattg |
618 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44161837 |
cgttaaatattg |
44161848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 305 - 618
Target Start/End: Original strand, 11104425 - 11104731
Alignment:
| Q |
305 |
attgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaataca |
404 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11104425 |
attgaagcagaagtca-aatacaaagcttctatgtg--tagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtaggaaaaataca |
11104521 |
T |
|
| Q |
405 |
ccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtg |
504 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
11104522 |
ccgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaataggagtgggtctcacgggaaacactatattgtatctctt---tg |
11104618 |
T |
|
| Q |
505 |
tgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttc |
604 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||| ||||||||| ||||| |
|
|
| T |
11104619 |
tgtgtaagagagtggagagaatattgtaatattcttagatatggtggaatatttttcggagtttgtcccgtggt-ttaccctcgatattagaggattttc |
11104717 |
T |
|
| Q |
605 |
cacgttaaatattg |
618 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
11104718 |
tatgttaaatattg |
11104731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 414 - 618
Target Start/End: Complemental strand, 48827000 - 48826799
Alignment:
| Q |
414 |
tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagaga |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48827000 |
tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgt--aaga |
48826903 |
T |
|
| Q |
514 |
gagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaa |
613 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||| |||||||||||||| |
|
|
| T |
48826902 |
gagcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgttaaa |
48826804 |
T |
|
| Q |
614 |
tattg |
618 |
Q |
| |
|
||||| |
|
|
| T |
48826803 |
tattg |
48826799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 519 - 618
Target Start/End: Complemental strand, 48708256 - 48708157
Alignment:
| Q |
519 |
gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattg |
618 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||||| |||||||||| |||||| |||| || ||||||| || ||||| || ||||||||||| |
|
|
| T |
48708256 |
gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg |
48708157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 445 - 604
Target Start/End: Complemental strand, 24726442 - 24726288
Alignment:
| Q |
445 |
ataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaat |
544 |
Q |
| |
|
|||||| |||| |||||| ||| |||||||||| ||||| |||| |||||||| ||| || ||||| ||||||||||||| | || ||||||||| |
|
|
| T |
24726442 |
ataataacatttgaataggagt-ggtctcacggaaaacaatatagtgtatctcgtgtcggta----agagaatggagagaatattattatgttctttaat |
24726348 |
T |
|
| Q |
545 |
atagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttc |
604 |
Q |
| |
|
||| ||||||||||||| ||||||||| ||||| ||||||| ||||||| ||||||| |
|
|
| T |
24726347 |
ataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc |
24726288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 622
Target Start/End: Original strand, 8538834 - 8539453
Alignment:
| Q |
1 |
ttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaa-ttgtaaatagtcttctacctatttaatgcaaggatgcatttttc |
99 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||||||||||||||||| || ||| || ||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
8538834 |
ttggccccaccacatgtgggtactgtt-ccagccaaagacaattactataaataaattataactagtcttctactcatttaatgcaatgatgcatttttc |
8538932 |
T |
|
| Q |
100 |
tacaaataggaaagctatgatatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagtt |
199 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8538933 |
tacaaataggaaagctatggtatagcttaaggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcattccaagtt |
8539032 |
T |
|
| Q |
200 |
tcacactttgaataccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaagg |
299 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| |||||||| | ||||||||||| |||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8539033 |
tcacactctgaatgtcatgacttttggtgtaagag-gtgtgaactatttccaactcttatggcttatttcccctataaatagaggc-atggaattgaagg |
8539130 |
T |
|
| Q |
300 |
aaagtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaa |
399 |
Q |
| |
|
|||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||| |
|
|
| T |
8539131 |
aaagcatcgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatatagtgttcagtaaattcagagagtgtgggaaaa |
8539230 |
T |
|
| Q |
400 |
atacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacact---atattgtatct |
496 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| |||||||| ||| ||||||||| | |||||| ||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
8539231 |
atacatcggatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtgggtctcac-ggaaacactataatattgtatct |
8539329 |
T |
|
| Q |
497 |
cttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattaga |
596 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
8539330 |
cttgtgtgtgt--aagagagtggagataatattgtaatattcttaaatatagtggaatatctttcggagtttgtcccgtgatttttccctcggtattaga |
8539427 |
T |
|
| Q |
597 |
gggttttccacgttaaatattgatgt |
622 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8539428 |
gggttttccacgttaaatattgatgt |
8539453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 217 - 618
Target Start/End: Complemental strand, 37040927 - 37040527
Alignment:
| Q |
217 |
tgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggct-catttcccctataaatagaggcaatggaattgaaggaaagtattgaagcaga |
315 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||| | |||||||||| ||||||||||| |
|
|
| T |
37040927 |
tgacttttagtgtaagagtgtgtgaaccaaatccaactcttacggcttcatttctcttataaatagagacaatgatagtgaaggaaagcattgaagcaga |
37040828 |
T |
|
| Q |
316 |
agtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggta |
415 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37040827 |
agtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacatcgggtgggta |
37040728 |
T |
|
| Q |
416 |
tcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagaga |
515 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37040727 |
tcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggaaaacactatattgtatctcttgtgtgtgtgag--aga |
37040630 |
T |
|
| Q |
516 |
gtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaata |
615 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37040629 |
gtggagaaaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaata |
37040530 |
T |
|
| Q |
616 |
ttg |
618 |
Q |
| |
|
||| |
|
|
| T |
37040529 |
ttg |
37040527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 310 - 618
Target Start/End: Original strand, 15290195 - 15290492
Alignment:
| Q |
310 |
agcagaagtgagaatacaaa---gcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
406 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
15290195 |
agcagaagtgaaaatacaaaaaagcttctgtgtgt--agaagtgtgtgagaa------tagagtgttgactaaatccagaaagtgtgg-aaaaatacacc |
15290285 |
T |
|
| Q |
407 |
gggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15290286 |
gggtgggtatcatctctataacttctaggtgctgaaata--atagcattcgaataggagtgggtctcacgg-aaacactatattgtatctcttgtgtgtg |
15290382 |
T |
|
| Q |
507 |
tgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttcca |
606 |
Q |
| |
|
| |||| |||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||| | | |||| |||||||||||||||||| |
|
|
| T |
15290383 |
taagag--agtggagagaatattgtaatattcttaaatatagtggaaaatcttttggagtttgtcccgtggtttatacctcggtattagagggttttcca |
15290480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 303 - 618
Target Start/End: Original strand, 12098956 - 12099263
Alignment:
| Q |
303 |
gtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaata |
402 |
Q |
| |
|
||||||||| |||||||| | ||||||| || ||||||| |||||| ||||| | ||||||||||||||||||||||| ||||| | | | |||||| |
|
|
| T |
12098956 |
gtattgaagtagaagtgaaactacaaagtttttgtgtgt--agaagtatgtgaaaggaaaaatagagtgttgagtaaattcagag--tctcg--aaaata |
12099049 |
T |
|
| Q |
403 |
caccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtg |
502 |
Q |
| |
|
| | ||| |||||||||||||||||| |||||| ||||| |||||| |||| |||||| ||| ||||||| ||||||| ||||||| ||||||||| |
|
|
| T |
12099050 |
gattgagtgagtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtg |
12099149 |
T |
|
| Q |
503 |
tgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttt |
602 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||| ||||| || |||||||||||| |
|
|
| T |
12099150 |
cgtgtaagag--agtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggttt |
12099247 |
T |
|
| Q |
603 |
tccacgttaaatattg |
618 |
Q |
| |
|
| ||||| |||||||| |
|
|
| T |
12099248 |
ttcacgtaaaatattg |
12099263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 302 - 568
Target Start/End: Original strand, 12081968 - 12082227
Alignment:
| Q |
302 |
agtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
401 |
Q |
| |
|
|||||||||||| |||||| |||||||| || | ||||||||||||||||| |||||| |||||||||| ||||||||||| | | ||||||||| |
|
|
| T |
12081968 |
agtattgaagcataagtgaagatacaaagttttt---tgtgtagaagtgtgtgatcagaaaattagagtgttgggtaaatccagaaaaag-gggaaaaat |
12082063 |
T |
|
| Q |
402 |
acaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgt |
501 |
Q |
| |
|
| | ||||| ||||| |||||||||||||||||| ||||||| |||||| |||| |||||| || |||||| |||||||||||||||||||||| | |
|
|
| T |
12082064 |
atatcgggtaggtattatctctataacttctaggcgctataaaataataacatttgaataggagcgagtctcattagaaacactatattgtatctctttt |
12082163 |
T |
|
| Q |
502 |
gtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagttt |
568 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
12082164 |
ccgtgt--aagagagtggagaaaatattgtaatattc-ttaatatagtggaatattttttggagttt |
12082227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 479 - 559
Target Start/End: Complemental strand, 2757448 - 2757370
Alignment:
| Q |
479 |
aaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttt |
559 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||||||||||||| || |||||| || |||||||||||||||||| |
|
|
| T |
2757448 |
aaacactatattgtatctcttgagtgtg--aaagagagtggagagaatagtgcaatatttttaaatatagtggaatatttt |
2757370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 299 - 368
Target Start/End: Original strand, 15302891 - 15302960
Alignment:
| Q |
299 |
gaaagtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaataga |
368 |
Q |
| |
|
||||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15302891 |
gaaagcatcgaagcagaattgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagagcaaaaataga |
15302960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 302 - 618
Target Start/End: Original strand, 12930626 - 12930940
Alignment:
| Q |
302 |
agtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
401 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930626 |
agtattgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
12930725 |
T |
|
| Q |
402 |
acaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgt |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930726 |
acaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctcttgt |
12930825 |
T |
|
| Q |
502 |
gtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggtt |
601 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
12930826 |
gtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtt |
12930923 |
T |
|
| Q |
602 |
ttccacgttaaatattg |
618 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12930924 |
ttccacgttaaatattg |
12930940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 302 - 618
Target Start/End: Original strand, 12935372 - 12935686
Alignment:
| Q |
302 |
agtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
401 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935372 |
agtattgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
12935471 |
T |
|
| Q |
402 |
acaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgt |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935472 |
acaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaagtaggtctcacgggaaacactatattgtatctcttgt |
12935571 |
T |
|
| Q |
502 |
gtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggtt |
601 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
12935572 |
gtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtt |
12935669 |
T |
|
| Q |
602 |
ttccacgttaaatattg |
618 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12935670 |
ttccacgttaaatattg |
12935686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 64 - 316
Target Start/End: Original strand, 17123887 - 17124139
Alignment:
| Q |
64 |
agtcttctacctatttaatgcaaggatgcatt--tttctacaaataggaaagctatgatatagcttacggtggagagacatggctaggcatagcttgctg |
161 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||| ||||||||| ||||||||||| || |||||| |
|
|
| T |
17123887 |
agtcttctatttatttaatgcaaggaagcattattttctacaaataggaaaactatagtatagcttaaggtggagaggcatggctaggcttatcttgctt |
17123986 |
T |
|
| Q |
162 |
tgcagaaaagtgtgaaggcttgcaattcatttcaagtttcacactttgaataccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacgg |
261 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||||||||||||||||||| |||||||||||||||||| | ||||||| || || ||||||||||| |
|
|
| T |
17123987 |
agcagaaaagtgtgaatgtttgcaattcattccaagtttcacactttgaatgttatgacttttggtgtaagaat-tgtgaactaattcaaactcttacgg |
17124085 |
T |
|
| Q |
262 |
ctcatttcccctataaatagaggcaatggaattgaaggaaagtattgaagcagaa |
316 |
Q |
| |
|
|| ||| | ||||||||||| |||||| | |||||||||| || |||| |||| |
|
|
| T |
17124086 |
cttgttt-tcttataaatagagtcaatggcaatgaaggaaagcatcgaagtagaa |
17124139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 503 - 622
Target Start/End: Complemental strand, 26505063 - 26504946
Alignment:
| Q |
503 |
tgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttt |
602 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | ||||| ||| ||| ||||||| ||| | |
|
|
| T |
26505063 |
tgtgtgaaagagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtggt-tttgccttgttattagacggtat |
26504965 |
T |
|
| Q |
603 |
tccacgttaaatattgatgt |
622 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
26504964 |
t-cacgttaaatattgatgt |
26504946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 513 - 622
Target Start/End: Original strand, 15588948 - 15589057
Alignment:
| Q |
513 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaa |
612 |
Q |
| |
|
|||||||||| ||| |||||||||| ||| ||| |||| ||||||||| ||||||||| | || | |||| |||| || ||||||||||| || ||| |
|
|
| T |
15588948 |
agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa |
15589047 |
T |
|
| Q |
613 |
atattgatgt |
622 |
Q |
| |
|
|||||||||| |
|
|
| T |
15589048 |
atattgatgt |
15589057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 17121733 - 17121801
Alignment:
| Q |
64 |
agtcttctacctatttaatgcaaggatgcatttt--tctacaaataggaaagctatgatatagcttacg |
130 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| |||||||||||||||| |||| |||||||||| |
|
|
| T |
17121733 |
agtcttctatgtatttaatgcaaggaagcatttttttctacaaataggaaagatatggcatagcttacg |
17121801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12930335 - 12930390
Alignment:
| Q |
1 |
ttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattg |
58 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
12930335 |
ttggccccaccacgtgtgggttatgt--ccagccaaagacaattgctacaagcaattg |
12930390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12935081 - 12935136
Alignment:
| Q |
1 |
ttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattg |
58 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
12935081 |
ttggccccaccacgtgtgggttatgt--ccagccaaagacaattgctacaagcaattg |
12935136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 302 - 618
Target Start/End: Original strand, 34907089 - 34907403
Alignment:
| Q |
302 |
agtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
401 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907089 |
agtattgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
34907188 |
T |
|
| Q |
402 |
acaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgt |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907189 |
acaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctcttgt |
34907288 |
T |
|
| Q |
502 |
gtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggtt |
601 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
34907289 |
gtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtt |
34907386 |
T |
|
| Q |
602 |
ttccacgttaaatattg |
618 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34907387 |
ttccacgttaaatattg |
34907403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 34906755 - 34907056
Alignment:
| Q |
1 |
ttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgcatttttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34906755 |
ttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgaatttttct |
34906854 |
T |
|
| Q |
101 |
acaaataggaaagctatgatatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagttt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34906855 |
acaaataggaaagctatggtatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagttt |
34906954 |
T |
|
| Q |
201 |
cacactttgaataccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaagga |
300 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
34906955 |
cacactctgaatgtcatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatagaattgaaaga |
34907054 |
T |
|
| Q |
301 |
aa |
302 |
Q |
| |
|
|| |
|
|
| T |
34907055 |
aa |
34907056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 299 - 618
Target Start/End: Complemental strand, 42911408 - 42911091
Alignment:
| Q |
299 |
gaaagtattgaagcagaagtgagaat-acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaa |
397 |
Q |
| |
|
||||| || ||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42911408 |
gaaagcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtggaaa |
42911309 |
T |
|
| Q |
398 |
aaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
497 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42911308 |
aaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaagtaggtctcaagggaaacactatattgtatctt |
42911209 |
T |
|
| Q |
498 |
ttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagag |
597 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
42911208 |
ttgtgtgtgtgag--agagtggagagaatattgtaatattcttaaatatagtggaata-ttttcggagtttgtcccgtggtttttccctcggtattagag |
42911112 |
T |
|
| Q |
598 |
ggttttccacgttaaatattg |
618 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
42911111 |
ggttttccatgttaaatattg |
42911091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 299 - 618
Target Start/End: Complemental strand, 29107291 - 29106976
Alignment:
| Q |
299 |
gaaagtattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaa |
398 |
Q |
| |
|
||||| || |||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29107291 |
gaaagcatcgaagcagaagtggaaatacaaagcttctctgtatgtagaagtgtgtgagagaaaaaatag--tgttgagtaaatccagagagtgtgggaaa |
29107194 |
T |
|
| Q |
399 |
aatacaccgggtggg-tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
497 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29107193 |
aatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagtaggtctcacgggaaacactat-ttgtatctc |
29107095 |
T |
|
| Q |
498 |
ttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagag |
597 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
29107094 |
ttgtgtgtgtaagagag--tggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagag |
29106997 |
T |
|
| Q |
598 |
ggttttccacgttaaatattg |
618 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
29106996 |
ggttttccacgttaaatattg |
29106976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 534 - 618
Target Start/End: Complemental strand, 38997320 - 38997236
Alignment:
| Q |
534 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattg |
618 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| || |||| || ||||||||||||||| |||| |||||||| |
|
|
| T |
38997320 |
tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattg |
38997236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 8e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 309 - 497
Target Start/End: Original strand, 51302118 - 51302306
Alignment:
| Q |
309 |
aagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg |
408 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51302118 |
aagcataagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattgagtaaatccagagagtgtggataaaatacaccgg |
51302217 |
T |
|
| Q |
409 |
gtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
497 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| | ||| ||||| |||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
51302218 |
gtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaataggagtgggtctcacgggaaacactatattgtatctc |
51302306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 51298525 - 51298598
Alignment:
| Q |
1 |
ttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacc |
74 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
51298525 |
ttggccccaccacgtgtggctattgtttctggccaaaaacaattactacaagtaattgcaaatagttttctacc |
51298598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 589 - 618
Target Start/End: Original strand, 51302308 - 51302337
Alignment:
| Q |
589 |
gtattagagggttttccacgttaaatattg |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
51302308 |
gtattagagggttttccacgttaaatattg |
51302337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 2308759 - 2308905
Alignment:
| Q |
1 |
ttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgcatttttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2308759 |
ttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgtatttttct |
2308858 |
T |
|
| Q |
101 |
acaaataggaaagctatgatatagcttacggtggagagacatggcta |
147 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
2308859 |
ataaataggaaaactatggtatagcttacggtggagagacatggcta |
2308905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 534 - 622
Target Start/End: Complemental strand, 2100379 - 2100294
Alignment:
| Q |
534 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattgatgt |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| || |||| |||| ||||| |||||||||||| |||||||||||||| |
|
|
| T |
2100379 |
tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgt |
2100294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 541
Target Start/End: Complemental strand, 2100771 - 2100723
Alignment:
| Q |
491 |
gtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattcttt |
541 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
2100771 |
gtatctcttgtgtatgtaagagag--tggagagaatattgtaatattcttt |
2100723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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