View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6708_low_30 (Length: 303)
Name: NF6708_low_30
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_30 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 16776069 - 16776339
Alignment:
| Q |
16 |
tcataagcttttcctttgatgatggtgatcgttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacattttaaacacttggtagctttgg |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16776069 |
tcataagcttctcctttgatgatggtgatcgttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacattttaaacacttggtagctttgg |
16776168 |
T |
|
| Q |
116 |
gtttattttctgtaatgggtttaggagaaggttttgtagaagtacgtactaggctgatcgttttctgttttgtagggataagaagaattctcagtggagg |
215 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16776169 |
gtttataatctgtagtgggtttaggagaaggttttgtagaagtacgtactaggctgatcgttttctgttttgtagggataagaagaattctcagtggagg |
16776268 |
T |
|
| Q |
216 |
taaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggctaaacgaacaacatcgtct |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
16776269 |
taaaattcctataagaatgcttcttgggtaaatgtttctccactcacatggccaaacgaacaacatcgtct |
16776339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 5381645 - 5381911
Alignment:
| Q |
16 |
tcataagcttttcctttgatgatggtgatcgttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacattttaaacacttggtagctttgg |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5381645 |
tcataagcttctcctttgatgatggtgatggttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgg |
5381744 |
T |
|
| Q |
116 |
gtttattttctgtaatgggtttaggagaaggttttgtagaagtacgtactaggctgatcgttttctgttttgtagggataagaagaattctcagtggagg |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5381745 |
gtttattttctgtagtgggtttaggagaaggttttgtagaa----gtactaggctgatcgttgtctgttttgcggggataagaagaattctcagtggagg |
5381840 |
T |
|
| Q |
216 |
taaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggctaaacgaacaacatcgtct |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5381841 |
aaaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggccaaacgaacaacatcgtct |
5381911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 13721412 - 13721678
Alignment:
| Q |
16 |
tcataagcttttcctttgatgatggtgatcgttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacattttaaacacttggtagctttgg |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13721412 |
tcataagcttctcctttgatgatggtgatggttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgg |
13721511 |
T |
|
| Q |
116 |
gtttattttctgtaatgggtttaggagaaggttttgtagaagtacgtactaggctgatcgttttctgttttgtagggataagaagaattctcagtggagg |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13721512 |
gtttattttctgtagtgggtttaggagaaggttttgtagaa----gtactgggctgatcgttgtctgttttgcggggataagaagaattctcagtggagg |
13721607 |
T |
|
| Q |
216 |
taaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggctaaacgaacaacatcgtct |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13721608 |
aaaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggccaaacgaacaacatcgtct |
13721678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 27827 - 28093
Alignment:
| Q |
16 |
tcataagcttttcctttgatgatggtgatcgttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacattttaaacacttggtagctttgg |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27827 |
tcataagcttctcctttgatgatggtgatggttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgg |
27926 |
T |
|
| Q |
116 |
gtttattttctgtaatgggtttaggagaaggttttgtagaagtacgtactaggctgatcgttttctgttttgtagggataagaagaattctcagtggagg |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27927 |
gtttattttctgtagtgggtttaggagaaggttttgtagaa----gtactgggctgatcgttgtctgttttgcggggataagaagaattctcagtggagg |
28022 |
T |
|
| Q |
216 |
taaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggctaaacgaacaacatcgtct |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28023 |
aaaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggccaaacgaacaacatcgtct |
28093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 88262 - 87996
Alignment:
| Q |
16 |
tcataagcttttcctttgatgatggtgatcgttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacattttaaacacttggtagctttgg |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
88262 |
tcataagcttctcctttgatgatggtgatggttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgg |
88163 |
T |
|
| Q |
116 |
gtttattttctgtaatgggtttaggagaaggttttgtagaagtacgtactaggctgatcgttttctgttttgtagggataagaagaattctcagtggagg |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
88162 |
gtttattttctgtagtgggtttaggagaaggttttgtagaa----gtactgggctgatcgttgtctgttttgcggggataagaagaattctcagtggagg |
88067 |
T |
|
| Q |
216 |
taaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggctaaacgaacaacatcgtct |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
88066 |
aaaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggccaaacgaacaacatcgtct |
87996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 11713116 - 11712850
Alignment:
| Q |
16 |
tcataagcttttcctttgatgatggtgatcgttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacattttaaacacttggtagctttgg |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11713116 |
tcataagcttctcctttgatgatggtgatggttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgg |
11713017 |
T |
|
| Q |
116 |
gtttattttctgtaatgggtttaggagaaggttttgtagaagtacgtactaggctgatcgttttctgttttgtagggataagaagaattctcagtggagg |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11713016 |
gtttattttctgtagtgggtttaggagaaggttttgtagaa----gtactgggctgatcgttgtctgttttgcggggataagaagaattctcagtggagg |
11712921 |
T |
|
| Q |
216 |
taaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggctaaacgaacaacatcgtct |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11712920 |
aaaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggccaaacgaacaacatcgtct |
11712850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 13162325 - 13162058
Alignment:
| Q |
16 |
tcataagcttttcctttgatgatggtgatcgttcttcgtgttggacaatttgaagctatatgtccaaaacctt-gacattttaaacacttggtagctttg |
114 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
13162325 |
tcataagcttctcctttgatgatggtgatggttcttcgggttggacaatttgaagctatatgtccaaaacctttgacatttgaaacactttgtagctttg |
13162226 |
T |
|
| Q |
115 |
ggtttattttctgtaatgggtttaggagaaggttttgtagaagtacgtactaggctgatcgttttctgttttgtagggataagaagaattctcagtggag |
214 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||| | |||||||| || ||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
13162225 |
ggtttattttctgtggtgggtttagaagaaggttttgtagaagtat----tgggctgatcattgtctgttttgcggggataagaagaattcttagtggag |
13162130 |
T |
|
| Q |
215 |
gtaaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggctaaacgaacaacatcgtct |
286 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13162129 |
gaaaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggccaaacgaacaacatcgtct |
13162058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 42377134 - 42376868
Alignment:
| Q |
16 |
tcataagcttttcctttgatgatggtgatcgttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacattttaaacacttggtagctttgg |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42377134 |
tcataagcttctcctttgatgatggtgatggttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgg |
42377035 |
T |
|
| Q |
116 |
gtttattttctgtaatgggtttaggagaaggttttgtagaagtacgtactaggctgatcgttttctgttttgtagggataagaagaattctcagtggagg |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42377034 |
gtttattttctgtagtgggtttaggagaaggttttgtagaa----gtactgggctgatcgttgtctgttttgcggggataagaagaattctcagtggagg |
42376939 |
T |
|
| Q |
216 |
taaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggctaaacgaacaacatcgtct |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42376938 |
aaaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggccaaacgaacaacatcgtct |
42376868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 14475175 - 14475441
Alignment:
| Q |
16 |
tcataagcttttcctttgatgatggtgatcgttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacattttaaacacttggtagctttgg |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14475175 |
tcataagcttctcctttgatgatggtgatggttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacatttgaaacacttggtagctttgg |
14475274 |
T |
|
| Q |
116 |
gtttattttctgtaatgggtttaggagaaggttttgtagaagtacgtactaggctgatcgttttctgttttgtagggataagaagaattctcagtggagg |
215 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14475275 |
gtttattttctgtagtggttttaggagaaggttttgtagaa----gtactgggctgatcgttgtctgttttgcggggataagaagaattctcagtggagg |
14475370 |
T |
|
| Q |
216 |
taaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggctaaacgaacaacatcgtct |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14475371 |
aaaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggccaaacgaacaacatcgtct |
14475441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 2795425 - 2795691
Alignment:
| Q |
16 |
tcataagcttttcctttgatgatggtgatcgttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacattttaaacacttggtagctttgg |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
2795425 |
tcataagcttctcctttgatgatggtgatggttcttcgtgttggacaatttgaagctatatgtccaaaaccttgaaatttgaaacacttggtagctttgg |
2795524 |
T |
|
| Q |
116 |
gtttattttctgtaatgggtttaggagaaggttttgtagaagtacgtactaggctgatcgttttctgttttgtagggataagaagaattctcagtggagg |
215 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||| || | ||||||||||| ||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
2795525 |
gtttattttctgtagtgggtttagaagaaggttttgtagaagt--gt--tgggctgatcgttgtctgttttgcggggataagaagaattcttagtggagg |
2795620 |
T |
|
| Q |
216 |
taaaattcctataagaatgcttcttgggtaaatgtttctccactcgcatggctaaacgaacaacatcgtct |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
2795621 |
aaaaattcctataagaatgcttcttgggtaaatgtttctccactcacatggccaaacgaacaacatcgtct |
2795691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 89698 - 89631
Alignment:
| Q |
28 |
cctttgatgatggtgatcgttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacattt |
95 |
Q |
| |
|
||||||||||||||||| ||| | || ||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
89698 |
cctttgatgatggtgatggttttgcgatttggacaatcagaagcaatatgtccaaacccttgacattt |
89631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 45163531 - 45163464
Alignment:
| Q |
28 |
cctttgatgatggtgatcgttcttcgtgttggacaatttgaagctatatgtccaaaaccttgacattt |
95 |
Q |
| |
|
||||||||||||||||| ||| | || ||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
45163531 |
cctttgatgatggtgatggttttgcgatttggacaatcagaagcaatatgtccaaacccttgacattt |
45163464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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