View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_low_32 (Length: 285)
Name: NF6708_low_32
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 1786650 - 1786912
Alignment:
| Q |
13 |
gacatcaaggtcaatctttattaacatcttaaacacattgagtataatgcttagaattgccataaagttgacagaattatatgatgacaccgtgattttg |
112 |
Q |
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| T |
1786650 |
gacatcaaggtcaatctttattaacatcttaaacaaattgagtacaatgcttagaattgccataaagttgacagaattatatgatgacaccttgattttg |
1786749 |
T |
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| Q |
113 |
ttaaaaatgtgataccgtaattttgtcaaattcactagtaatcgaaacatatat--taatttgcggttttggtacaacatgacatgtagattaataattg |
210 |
Q |
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| T |
1786750 |
ttaaaattgtgatatcgaaattttgtcaaattcactagtaatcgaaacatatatactaatttttggttttggtacgacatgacacgtagattaataattg |
1786849 |
T |
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| Q |
211 |
tggtaaaagaagtcttgtgttagnnnnnnnggttacaaaaagggtgggagaggtgcaacacaa |
273 |
Q |
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| T |
1786850 |
tggtaaaaggagtcttgtgttagtttttttggttacacaaagggtgggagaggtgcaacacaa |
1786912 |
T |
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