View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_low_43 (Length: 229)
Name: NF6708_low_43
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_43 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 14301801 - 14302029
Alignment:
| Q |
1 |
tcatactttccactttgcactactctcccttctcgcatcacctttgaaattggtatcaaaacaagccaagtttctcagttgaacttgaaaaaactttaat |
100 |
Q |
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| T |
14301801 |
tcatactttccactttgcactactctcccttctcgcatcacctttgaaattggtatcaaaacaagccaagtttctcagttgaacttgaaaaaactttaat |
14301900 |
T |
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| Q |
101 |
gtttaaggttatttattgcaaacaagttatcagttctcagcaatctcaaaaatgatgactgtgatagattaacagtgcnnnnnnnttacgctgaaagtgt |
200 |
Q |
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| T |
14301901 |
gtttaaggttatttattgcaaacaagttatcagttctcagcaatctcaaaaatgatgactgtgatagattaacagtgcaaaaaaattacgctgaaagtgt |
14302000 |
T |
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| Q |
201 |
ataaaaattaatctatatattttcccccc |
229 |
Q |
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| T |
14302001 |
ataaaaattaatctatatattttcccccc |
14302029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 14280038 - 14280169
Alignment:
| Q |
1 |
tcatactttccactttgcactactctcccttctcgcatcacctttgaaattggtatcaaaacaagcc-aagtttctcagttgaacttgaaaaaactttaa |
99 |
Q |
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| T |
14280038 |
tcatactttccactttgcactactctcccttctcgcatcacctttgaaattggtatcaaaacaagccaaagtttctcag------ttgaaagaacttgaa |
14280131 |
T |
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| Q |
100 |
tgtttaaggttatttattgcaaacaagttatcagttct |
137 |
Q |
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| T |
14280132 |
tgtttaaggctatttattgcaaacaagttatcagttct |
14280169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 14318224 - 14318292
Alignment:
| Q |
1 |
tcatactttccactttgcactactctcccttctcgcatcacctttgaaattggtatcaaaacaagccaa |
69 |
Q |
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| T |
14318224 |
tcatactttccactttgtactactctcccttcacgcatcacctttaaagttggtatcaaaataagccaa |
14318292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 216
Target Start/End: Original strand, 14302063 - 14302093
Alignment:
| Q |
186 |
ttacgctgaaagtgtataaaaattaatctat |
216 |
Q |
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| T |
14302063 |
ttacgctgaaagtgtataaaaattaatctat |
14302093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25883644 - 25883697
Alignment:
| Q |
1 |
tcatactttccactttgcactactctcccttctcgcatcacctttgaaattggt |
54 |
Q |
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| T |
25883644 |
tcatactttccactttgcactactctcccttcacgcatcacctttaaagttggt |
25883697 |
T |
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