View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_low_44 (Length: 229)
Name: NF6708_low_44
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_44 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 10642771 - 10642980
Alignment:
| Q |
12 |
aatgagatgtaaggtaggcttagtgaggataacatgatttctggtatgggccacatgtgtcttgtgctatgtgcttgtgtgtatccttcttagttgtgtg |
111 |
Q |
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| T |
10642771 |
aatgagatgtaaggtaggcttagtgaggataacatgatttctggtatgggccacgtgtgtcttgtg-------cttgtgtgtatccttcttagttgtgtg |
10642863 |
T |
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| Q |
112 |
attgcttttatgtactatttttgtattataagcctattgggtttgtacgtatacttgttaaatatcaaaaatatttcaataagaaccatgtatccttctc |
211 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
10642864 |
attgcttttatgtacgatttttgtattataagcctattgggtttgtacgtatacttgttaaatatcagaaatatttcaataagaaccgtgtatccttctc |
10642963 |
T |
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| Q |
212 |
tgtttgggtctgttttg |
228 |
Q |
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||||||||||||||||| |
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| T |
10642964 |
tgtttgggtctgttttg |
10642980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 32713067 - 32712858
Alignment:
| Q |
12 |
aatgagatgtaaggtaggcttagtgaggataacatgatttctggtatgggccacatgtgtcttgtgctatgtgcttgtgtgtatccttcttagttgtgtg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| |
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| T |
32713067 |
aatgagatgtaaggtaggcttagtgaggataacatgatttctggtatgggctacgtgtgtcttgtgct-------tgtgtgtatccttcttagttgtgtg |
32712975 |
T |
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| Q |
112 |
attgcttttatgtactatttttgtattataagcctattgggtttgtacgtatacttgttaaatatcaaaaatatttcaataagaaccatgtatccttctc |
211 |
Q |
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| T |
32712974 |
attgcttttatgtactatttttgtattataagcctattgggtttgtacgtatacttgttaaatatcagaaatatttcaataagaactgtgtctccttctc |
32712875 |
T |
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| Q |
212 |
tgtttgggtctgttttg |
228 |
Q |
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||||||||||||||||| |
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| T |
32712874 |
tgtttgggtctgttttg |
32712858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 23923878 - 23923669
Alignment:
| Q |
12 |
aatgagatgtaaggtaggcttagtgaggataacatgatttctggtatgggccacatgtgtcttgtgctatgtgcttgtgtgtatccttcttagttgtgtg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |
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| T |
23923878 |
aatgagatgtaaggtaggcttagtgaggataacatgatttctggtatgggccacgtgtgtcttgtgtt-------tgtgtgtatccttcttagttgtgtg |
23923786 |
T |
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| Q |
112 |
attgcttttatgtactatttttgtattataagcctattgggtttgtacgtatacttgttaaatatcaaaaatatttcaataagaaccatgtatccttctc |
211 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23923785 |
gttgcttttatgtactatttttgtattataagtctattgggtttgtacgtatacttgttaaatatcagaaatatttcaataagaaccatgtatccttctc |
23923686 |
T |
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| Q |
212 |
tgtttgggtctgttttg |
228 |
Q |
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||||||||||||||||| |
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| T |
23923685 |
tgtttgggtctgttttg |
23923669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 3462 - 3554
Alignment:
| Q |
136 |
attataagcctattgggtttgtacgtatacttgttaaatatcaaaaatatttcaataagaaccatgtatccttctctgtttgggtctgttttg |
228 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3462 |
attagaagcctattgggtttgtacgtatacttgttaaatatcagaaatatttcaataagaaccgtgtatccttctctgtttgggtctgttttg |
3554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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