View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_low_47 (Length: 223)
Name: NF6708_low_47
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_47 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: scaffold0212 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 13845 - 14036
Alignment:
| Q |
19 |
acatcagcagatgttacaataatacgtagatgagttttggctggtacaaccactctattgtccacttctaataaacgtgattgacccaattctagatcat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13845 |
acatcagcagatgttacaataatacgtagatgagttttggctggtacaaccactctattgtccacttctaataaacgtgattgacccaattctagatcat |
13944 |
T |
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| Q |
119 |
cttccggaatcgtataactgtcaaaagtgagtgactgttcatcggaactgttatagtctgaatactcataagtccgataccattgatgtcca |
210 |
Q |
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| T |
13945 |
cttccggaatcgtataactgtcaaaagtgagtgactgttcatcggaactgttatagtctgaatactcataagtccgataccattgatgtcca |
14036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 1677661 - 1677528
Alignment:
| Q |
19 |
acatcagcagatgttacaataatacgtagatgagttttggctggtacaaccactctattgtccacttctaataaacgtgattgacccaattctagatcat |
118 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||| |||||||| |
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| T |
1677661 |
acatcaacaaatgttacaataatacgtagatgagttttggctggtacaatcactctattgtccaattctaataaacatgattgacctaattatagatcat |
1677562 |
T |
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| Q |
119 |
cttccggaatcgtataactgtcaaaagtgagtga |
152 |
Q |
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|||| |||||||||| | |||||||||||||| |
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| T |
1677561 |
tttccaaaatcgtataagtttcaaaagtgagtga |
1677528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 34584443 - 34584489
Alignment:
| Q |
164 |
aactgttatagtctgaatactcataagtccgataccattgatgtcca |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34584443 |
aactgttatagtctgaatactcataagtccgataccattgatgtcca |
34584489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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