View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_low_48 (Length: 222)
Name: NF6708_low_48
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_48 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32650776 - 32650558
Alignment:
| Q |
1 |
tcagcatctcaattcgtttactctttcctttcatttatttgcattatcgccgtgataaatggatcagaattgttctgatatttacacaaatataaacaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32650776 |
tcagcatctcaattcgtttactctttcctttcatttattttcattatggccgtgatgaatggatcagaattgttctgatatttacacaaatataaacaaa |
32650677 |
T |
|
| Q |
101 |
cccctcatgaaatgatttcagtacgttaatcattatgattgttcacgttctggtactttttcctttggattccacctctctctaatattaattttcttgt |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32650676 |
cccctcatgaaatgatttca----gttaatcattatgattgttcacgttctggtactttttcctttggattccacctctctctaatattaattttcatgt |
32650581 |
T |
|
| Q |
201 |
-gtccaattttgttttgggtttc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
32650580 |
ggtccaattttgttttgggtttc |
32650558 |
T |
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