View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_low_49 (Length: 215)
Name: NF6708_low_49
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_49 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 9887275 - 9887182
Alignment:
| Q |
21 |
aatcgcaagcttaacataatgaatatcaattgcagacttgctagcatgctctaaataaacttgagtgtctgttaacacatcaataacttatcaa |
114 |
Q |
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| T |
9887275 |
aatcacaagcttaacataatgaatatcaattgcagacttgctagcatgctctaaataaacttgagtgtctgttaacacatcaataacttatcaa |
9887182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 9887120 - 9887016
Alignment:
| Q |
111 |
tcaacaaagacttgaatatgccaagggatgcaaagattgtgcaatctttaaatttattgaaatcaatgggtgtggaagaatatgaaccttgtgttataca |
210 |
Q |
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| T |
9887120 |
tcaacaaagacttgaatatgccaagggatgaaaagattgtgcaatctttaaatttgttgaaatcaatgggtgtgaaagaatatgaaccttctgttataca |
9887021 |
T |
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| Q |
211 |
caagt |
215 |
Q |
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| T |
9887020 |
caagt |
9887016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 9886896 - 9886988
Alignment:
| Q |
11 |
gatggacatcaatcgcaagcttaacataatgaatatcaattgcagacttgctagcatgctctaaataaacttgagtgtctgttaacacatcaa |
103 |
Q |
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| T |
9886896 |
gatggaaatcaattgcagacttaacatcatgaatatcaattgcagacttgctagcatgctctgaatacacttgggcatctgttaacacatcaa |
9886988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 9887117 - 9887165
Alignment:
| Q |
167 |
ttgaaatcaatgggtgtggaagaatatgaaccttgtgttatacacaagt |
215 |
Q |
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| T |
9887117 |
ttgaagtcaataggtgtggaagaatatgaaccttgtgttatacacaagt |
9887165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 4328717 - 4328632
Alignment:
| Q |
124 |
gaatatgccaagggatgcaaagattgtgcaatctttaaatttattgaaatcaatgggtgtggaagaatatgaaccttgtgttatacacaagt |
215 |
Q |
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| T |
4328717 |
gaatatgccaagggatgcaaagattgtgcagtctttg------ttgaaatcaatgggtgtggaagaatatgaacctcgtgttataaacaagt |
4328632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 4328529 - 4328604
Alignment:
| Q |
28 |
agcttaacataatgaatatcaattgcagacttgctagcatgctctaaataaacttgagtgtctgttaacacatcaa |
103 |
Q |
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| T |
4328529 |
agcttaacatcatcaacatcaattgcaggcttgccagcatgctctgaatacacctgggcatctgttaacacatcaa |
4328604 |
T |
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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 50747355 - 50747440
Alignment:
| Q |
124 |
gaatatgccaagggatgcaaagattgtgcaatctttaaatttattgaaatcaatgggtgtggaagaatatgaaccttgtgttatacacaagt |
215 |
Q |
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| T |
50747355 |
gaatatgccaagggatgcaaagattatgcagtctttg------ttgaaatcaatgggtgtggaagaatatgaacctcgtgttataaacaagt |
50747440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 50747543 - 50747468
Alignment:
| Q |
28 |
agcttaacataatgaatatcaattgcagacttgctagcatgctctaaataaacttgagtgtctgttaacacatcaa |
103 |
Q |
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| T |
50747543 |
agcttaacatcatcaacatcaattgcaggcttgccagcatgctctgaatacacctgggcatctgttaacacatcaa |
50747468 |
T |
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