View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_low_51 (Length: 204)
Name: NF6708_low_51
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 33606441 - 33606626
Alignment:
| Q |
1 |
tggaatgcaagtggggtgttcttggttacaccttctgctttaactgtgaatgaagttggttcgaggcagaatttcttggcgttgtattttcctggtttga |
100 |
Q |
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| T |
33606441 |
tggaatgcaagtggggtgttcttggttacaccttctgctttaactgtgaatgaagttggttcgaggcagaatttcttggcgttgtattttcctggtttga |
33606540 |
T |
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| Q |
101 |
aggagaatgagtctactcctccatcaatggttggacattggtttgctgttccggttcctttgacttccatatatgttttgctttga |
186 |
Q |
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| T |
33606541 |
aggagaatgagtctactcctccatcaatggttggacattggtttgctgttccggttcctttgacttccaaatatgttttgctttga |
33606626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 6962827 - 6962688
Alignment:
| Q |
43 |
actgtgaatgaagttggttcgaggcagaatttcttggcgttgtattttcctggtttgaaggagaatgagtctactcctccatcaatggttggacattggt |
142 |
Q |
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|||||||||||||||||||| ||||||||||| || || ||||||||||||| ||||||||||||||||| ||| || ||||| ||||||||||||| |
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| T |
6962827 |
actgtgaatgaagttggttcaaggcagaatttttttgcattgtattttcctgacttgaaggagaatgagtcggatccaccttcaattgttggacattggt |
6962728 |
T |
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| Q |
143 |
ttgctgttccggttcctttgacttccatatatgttttgct |
182 |
Q |
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| T |
6962727 |
tagctgttcctgttcctttcacttctaagtatgttttgct |
6962688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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