View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6708_low_6 (Length: 522)

Name: NF6708_low_6
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6708_low_6
NF6708_low_6
[»] chr7 (2 HSPs)
chr7 (1-506)||(39480150-39480655)
chr7 (4-279)||(39126999-39127272)


Alignment Details
Target: chr7 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 39480150 - 39480655
Alignment:
Q  1 accgaatcttcttccaagtttagctctgtgtttgccaagatcatagcagcaccgcctgcttccttcacagcttgacccttttctgatcttccgttgacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39480150 accgaatcttcttccaagtttagctctgtgtttgccaagatcatagcagcaccacctgcttccttcacagcttgacccttttctgatcttccgttgacac 39480249  T
Q  101 ctcgatcacataccaccatttttccttgaactttgtcctttggaagagaccctttgaggcaaaattgactctcactatccccaccagagaggtaaaccag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39480250 ctcgatcacataccaccatttttccttgaactttgtcctttggaagagaccctttgaggcaaaattgactctcactatccccaccagagaggtaaaccag 39480349  T
Q  201 ctcaagttctttgctattgcttgctattctgttcaccggatacatggattctccatagagaacttgtccattacccatgcgaactatagctgggaatttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39480350 ctcaagttctttgctattgcttgctattctgttcaccggatacatggattctccatagagaacttgtccattacccatgcgaactatagctgggaatttt 39480449  T
Q  301 ctgtcaagtgtgcttgctccaatagttgcaatccaaggagcatcattggcaacagacatcgccattgggccattgtttcctgccgcacatataactgaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39480450 ctgtcaagtgtgcttgctccaatagttgcaatccaaggagcatcattggcaacagacatcgccattgggccattgtttcctgccgcacatataactgaaa 39480549  T
Q  401 tccctttctccattgctcgaaagcttccaatggcaatactatcatcatatagtggcaccgggaaaccgcctagagacaaggatagaacgtccacaccgtc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  39480550 tccctttctccattgctcgaaagcttccaatggcaatactatcatcatatagtggcaccgggaaaccacctagagacaaggatagaacgtccacaccatc 39480649  T
Q  501 tctgat 506  Q
    ||||||    
T  39480650 tctgat 39480655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 4 - 279
Target Start/End: Complemental strand, 39127272 - 39126999
Alignment:
Q  4 gaatcttcttccaagtttagctctgtgtttgccaagatcatagcagcaccgcctgcttccttcacagcttgacccttttctgatcttccgttgacacctc 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||  | |||||| |||||| |||||||||||||||||||||| ||||||||||    
T  39127272 gaatcttcttccaagttaagctctgtgtttgccaagatcatagcagtactacttgcttcattcacaacttgacccttttctgatcttccattgacacctc 39127173  T
Q  104 gatcacataccaccatttttccttgaactttgtcctttggaagagaccctttgaggcaaaattgactctcactatccccaccagagaggtaaaccagctc 203  Q
     ||| ||||  ||| |||| ||||||| |||| |||||||||||||    ||||||| |||||||||||||||||| ||||||   ||||||||| ||||    
T  39127172 aatcgcatatgaccgttttgccttgaaatttgacctttggaagaga-gtattgaggc-aaattgactctcactatctccaccacttaggtaaaccggctc 39127075  T
Q  204 aagttctttgctattgcttgctattctgttcaccggatacatggattctccatagagaacttgtccattacccatg 279  Q
    ||||||||||| ||||||||||||  |||| ||  ||||||||||||||||||||||||||||||||||| |||||    
T  39127074 aagttctttgccattgcttgctataatgtttacaagatacatggattctccatagagaacttgtccattatccatg 39126999  T

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