View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_low_9 (Length: 463)
Name: NF6708_low_9
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 4 - 442
Target Start/End: Original strand, 39229493 - 39229931
Alignment:
| Q |
4 |
gagatgaagcaatagcagagatggaagacgtttcaatatcactaaaagggtatccaggtaagttcaatttcatagcaatttcgcaataaaatcacgctgt |
103 |
Q |
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| T |
39229493 |
gagaagaagcaatagcagagatggaagacgtttcaatatcactaaaagggtatccaggtaagttcaatttcatagcactttcgcaataaaatcacgctgt |
39229592 |
T |
|
| Q |
104 |
agnnnnnnnnttatcgcttttctctaatgctattttttctcttgagcagaagtacatgcagctcttgcagcagctttatatgcagataagcatgctgcgt |
203 |
Q |
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| T |
39229593 |
agaaaaaaaattatcgcttttctctaatgctattttttctcttgagcagaagtacatgcagctcttgcagcagccttatatgcagataagcatgctgcgt |
39229692 |
T |
|
| Q |
204 |
tgcttgctgaaaaccagtttacaattgcaactcttcttgatcctcattttacagatctttcatatgttagagacacaaagcactggcctccaagtttgat |
303 |
Q |
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| T |
39229693 |
tgcttgctgaaaaccagtttacaattgcaactcttcttgatcctcattttacagatctttcatatgttagagacacaaagcactggcctccgagtttgat |
39229792 |
T |
|
| Q |
304 |
tagttctctgcagcatttcattacactatcttaagaccttacattatatttatacgttttgtttaacacatactttagcagttatatgaaaactttctca |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39229793 |
tagttctctgcagcatttcattacactatcttaagaccttacattatatttatacgttttgtttaacacatactttagcagttatatgaaaactttctca |
39229892 |
T |
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| Q |
404 |
ggtttggacctttattacaacttcaaatgtatacccttg |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
39229893 |
ggtttggacctttattacaacttcaaatgtatacccttg |
39229931 |
T |
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