View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6709_high_13 (Length: 239)
Name: NF6709_high_13
Description: NF6709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6709_high_13 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 3799051 - 3799231
Alignment:
| Q |
59 |
taatgttaatcatatactctttggaacacattttttgtagcagaagcaagcaaaaccaaagccttgacgatgacaagcaccgaaagtagcatgctccaca |
158 |
Q |
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| T |
3799051 |
taatgttaacaatatactctttggagcacattttttgtagcagaagcaagcaaaaccaaagccttgacgatgacaagcaccaaaagtagcatgctccaca |
3799150 |
T |
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| Q |
159 |
ctgatgcattgtcttttacagtttcctgagttgaaacaaagtccagaccatgttttacttcgcttttgacaaatttttgct |
239 |
Q |
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| T |
3799151 |
ttaatgcattgtcttttgcagtttcctgtgttaagacaaggtcctgaccatgttgtacttcgcttttgacaaagttttgct |
3799231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 3795121 - 3795244
Alignment:
| Q |
41 |
gttcaaatataagagttgtaatgttaatcatatactctttggaacacattttttgtagcagaagcaagcaaaaccaaagccttgacgatgacaagcaccg |
140 |
Q |
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| T |
3795121 |
gttcaaatataagagttgtaatgttaacaatatactcttcggaacatactttttgtagcagaagcaagcaaaaccaaagccttgatgatgacaagcaccg |
3795220 |
T |
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| Q |
141 |
aaagtagcatgctccacactgatg |
164 |
Q |
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| T |
3795221 |
aaagcagcatgctacacattgatg |
3795244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 3812419 - 3812568
Alignment:
| Q |
90 |
tttttgtagcagaagcaagcaaaaccaaagccttgacgatgacaagcaccgaaagtagcatgctccacactgatgcattgtcttttacagtttcctgagt |
189 |
Q |
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| T |
3812419 |
tttttgtagcagaagcaagcaaaaccaaagccttgacggtgacaagcaccgaaggttgcattctccacatcaacgcattgtcttttacagtttcctgtgt |
3812518 |
T |
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| Q |
190 |
tgaaacaaagtccagaccatgttttacttcgcttttgacaaatttttgct |
239 |
Q |
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| T |
3812519 |
taagacaaggtcctgaccacgttttacttcgtttttgacacacttttgct |
3812568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 3804425 - 3804554
Alignment:
| Q |
90 |
tttttgtagcagaagcaagcaaaaccaaagccttgacgatgacaagcaccgaaagtagcatgctccacactgatgcattgtcttttacagtttcctgagt |
189 |
Q |
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| T |
3804425 |
tttttgtagcaaaagcaagcgaaaccaaagccttgacgatgacaagcaccaaatgtagcatgctccacattgatgcactgtcttttacagtttcccgtgt |
3804524 |
T |
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| Q |
190 |
tgaaacaaagtccagaccatgttttacttc |
219 |
Q |
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| T |
3804525 |
taatacaaatccctgaccatgttttacttc |
3804554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 231
Target Start/End: Original strand, 3798691 - 3798836
Alignment:
| Q |
86 |
acattttttgtagcagaagcaagcaaaaccaaagccttgacgatgacaagcaccgaaagtagcatgctccacactgatgcattgtcttttacagtttcct |
185 |
Q |
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| T |
3798691 |
acattttttcttgcagaagcaagcaaaaccaatgccttgacggtgacaagcaccagaagttgcatgctcaacattgatgcactgtcttttacaatttcct |
3798790 |
T |
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| Q |
186 |
gagttgaaacaaagtccagaccatgttttacttcgcttttgacaaa |
231 |
Q |
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| T |
3798791 |
gagataagacaaggtcctgaccatgttttgcttcgcctttcacaaa |
3798836 |
T |
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