View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6709_high_5 (Length: 410)
Name: NF6709_high_5
Description: NF6709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6709_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 19415857 - 19416254
Alignment:
| Q |
1 |
ccgtcttggacttgcactcaacttctctgtcttttattatgagattatgaactctcctgaaaggtaagtaattgcttctctcctactttgcatggttctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19415857 |
ccgtcttggacttgcactcaacttctctgtcttttattatgagattatgaactctcctgaaaggtaagtaattggttctctcctactttgcatggttctg |
19415956 |
T |
|
| Q |
101 |
ttgcttttgtttatatctctt--gtctaagtggcggtgataaaacttacagggcctgccatttggccaaacaagcttttgatgaggcgattgcagagttg |
198 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19415957 |
ttgcttttgtttatatctcttttgtctaagtggcggtgataaaacttacagggcctgccatttggccaaacaagcttttgatgaggcgattgcagagttg |
19416056 |
T |
|
| Q |
199 |
gataccttgagtgaagagtcatacaaggacagcactttgatcatgcagttgttaagagacaacctgactctctggacctctgatttaccagaggatggag |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19416057 |
gataccttgagtgaagagtcatacaaggacagcactttgatcatgcagttgttaagagacaacctgactctctggacctctgatttaccagaggatggag |
19416156 |
T |
|
| Q |
299 |
gtaagggataatgactaacacttgatttaagatgcatctgtgttgtacgtctttcaagctctccag-nnnnnnngcttttaaaaattagggatatatg |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19416157 |
gtaagggataatgactaacacttgatttaagatgcatctgtgttgtacgtctttcaagctctccagttttttttgcttttaaaaattagggatatatg |
19416254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 27126720 - 27126793
Alignment:
| Q |
172 |
gcttttgatgaggcgattgcagagttggataccttgagtgaagagtcatacaaggacagcactttgatcatgca |
245 |
Q |
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|
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|
| T |
27126720 |
gcttttgacgaggctattgctgaattagatacattgggagaggaatcatacaaggatagcactttgatcatgca |
27126793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 140 - 303
Target Start/End: Original strand, 32314846 - 32315009
Alignment:
| Q |
140 |
aaacttacagggcctgccatttggccaaacaagcttttgatgaggcgattgcagagttggataccttgagtgaagagtcatacaaggacagcactttgat |
239 |
Q |
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|||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||| ||||| || |
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| T |
32314846 |
aaacatacagggcctgtcatttggctaaacaagctttcgatgaggcaattgcagatttagataccttgagtgaagagtcatacaaggacagtactttaat |
32314945 |
T |
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| Q |
240 |
catgcagttgttaagagacaacctgactctctggacctctgatttaccagaggatggaggtaag |
303 |
Q |
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|
| T |
32314946 |
catgcagttgttgagagacaacctaactctttggacctctgatttacctgaggatggaggtaag |
32315009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32314138 - 32314206
Alignment:
| Q |
1 |
ccgtcttggacttgcactcaacttctctgtcttttattatgagattatgaactctcctgaaaggtaagt |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||| |
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| T |
32314138 |
ccgtcttggacttgcactcaacttctctgtcttctactatgagataatgaactctcctgaaaggcaagt |
32314206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 35776161 - 35776207
Alignment:
| Q |
20 |
aacttctctgtcttttattatgagattatgaactctcctgaaaggta |
66 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
35776161 |
aacttctctgtcttttattatgaaattttgaactctcctgaaaggta |
35776207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 32203346 - 32203452
Alignment:
| Q |
197 |
tggataccttgagtgaagagtcatacaaggacagcactttgatcatgcagttgttaagagacaacctgactctctggacctctgatttaccagaggatgg |
296 |
Q |
| |
|
|||||||| | | |||||| || ||||||||||| || |||||||||||| |||| |||||||||| ||| | ||||| |||||| | ||||| ||||| |
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| T |
32203346 |
tggataccctaaatgaagattcttacaaggacagtaccttgatcatgcagctgttgcgagacaaccttactttatggacttctgatatcccagaagatgg |
32203445 |
T |
|
| Q |
297 |
aggtaag |
303 |
Q |
| |
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|||||| |
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| T |
32203446 |
tggtaag |
32203452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 302
Target Start/End: Complemental strand, 39356299 - 39356148
Alignment:
| Q |
151 |
gcctgccatttggccaaacaagcttttgatgaggcgattgcagagttggataccttgagtgaagagtcatacaaggacagcactttgatcatgcagttgt |
250 |
Q |
| |
|
||||||||| | || || || ||||||||||| || ||| ||||| | || ||||||| ||| ||||| ||||| || || || ||||||||||| | |
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| T |
39356299 |
gcctgccatcttgcaaagcaggcttttgatgaagctatttcagagctcgacaccttgaatgaggagtcctacaaagatagtacattgatcatgcaacttc |
39356200 |
T |
|
| Q |
251 |
taagagacaacctgactctctggacctctgatttaccagaggatggaggtaa |
302 |
Q |
| |
|
| || |||||||||||||||||||| ||||| | || || ||||||||||| |
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|
| T |
39356199 |
tcagggacaacctgactctctggacttctgacatcccggaagatggaggtaa |
39356148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 45556036 - 45556109
Alignment:
| Q |
172 |
gcttttgatgaggcgattgcagagttggataccttgagtgaagagtcatacaaggacagcactttgatcatgca |
245 |
Q |
| |
|
||||||||||| || ||||| |||||||||||| | | || || ||||||||||| ||||||||||||||||| |
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| T |
45556036 |
gcttttgatgaagcaattgctgagttggatacccttggcgaggaatcatacaaggatagcactttgatcatgca |
45556109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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