View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6709_high_7 (Length: 327)
Name: NF6709_high_7
Description: NF6709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6709_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 26405560 - 26405251
Alignment:
| Q |
1 |
ctgttctttatctattccagtatggtcaaccaaacctgaggcatatgtaggtgtaaattagcaagtgtagacattatctattagcttaagaaataatttt |
100 |
Q |
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| T |
26405560 |
ctgttctttatctactccagtatggtcaaccaaacctgaggcatatgtaggtgtaatttagcaagtgtagacattgtctattagcttaagaaataatttt |
26405461 |
T |
|
| Q |
101 |
tcactagtcactatgaaatcaaggataactcttatgttaataataaaaccagtttgatgaggaaaagaaatgacaaatgatactnnnnnnntgttttcca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
26405460 |
tcactagtcactatgaaatcaaggataactcttatgttaataataaaaccagtttgatgaggaaaagaaattacaaatgatactaaaaaaatgttttcca |
26405361 |
T |
|
| Q |
201 |
tnnnnnnnnnnnnntggattgataaatgtgtacagcatggtgggtgtaaactagcaaggtggtgagatatattggatcttttaaggaagtgtctcatggt |
300 |
Q |
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| T |
26405360 |
taaaaaaaaaaaaatggattgataaatgtgtacagcatggtgggtgtaaactaccaaggcggtgag--atattggatcttttaaggaagtgtttcatggt |
26405263 |
T |
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| Q |
301 |
aaaagtagcttc |
312 |
Q |
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|||||||||||| |
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| T |
26405262 |
aaaagtagcttc |
26405251 |
T |
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