View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6709_high_8 (Length: 285)
Name: NF6709_high_8
Description: NF6709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6709_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 7567452 - 7567197
Alignment:
| Q |
13 |
aatatcgacattgtcagttgagctgtgtcttattgactaaaataatatttttcttataaaactctcaacaatgatgttattttctatagaaaaagaatat |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7567452 |
aatatcgacattgtcagttgagctgtatcttattgactaaaataatatttttcttataaaactctcaacaatgatgttattttctatagaaaaagaatat |
7567353 |
T |
|
| Q |
113 |
atacttattttctaaatgaaatagtattaggttaatttaagggtgctaattagtctcttataaccacaattatgcttcaaatgctgttccaaagatttat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7567352 |
atacttattttctaaatgaaatagtattagattaatttaagggtgctaattagtctcttataaccacaattatgcttcaaatgctgttccaaggatttat |
7567253 |
T |
|
| Q |
213 |
ttttgttttaacatagtatccatttcagatgtttcctactagtgtttgcatgtact |
268 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7567252 |
ttttgttttaacatagtattcatttcagatgtttcctactagtgtttgcatgtact |
7567197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University