View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6709_low_12 (Length: 251)
Name: NF6709_low_12
Description: NF6709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6709_low_12 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 26405784 - 26405540
Alignment:
| Q |
13 |
aaaatatggtatttacgtgacttatgtttctggttgcatcatgatacaatggacataaaatgtggacgtaaatatatggtttaaaatgctgtatgcttgg |
112 |
Q |
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| T |
26405784 |
aaaatatggtatttacgtgacttatgtttctggttgcatcatcatacattggacataaaaggtggacgtaaatatatggtttaaaatgctgtatgcttgg |
26405685 |
T |
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| Q |
113 |
gtcactataccctacaatctattataagaaagttttggaaacaaataggaaaagaggaggg--ggacttataattttccacatgtcaaggtaaaataatc |
210 |
Q |
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| T |
26405684 |
gtcactataccctacaatctattataagaaagttttggaaacaaataggaaaagagggggggaggacttataattttccacatgtcaaggtaaaataatc |
26405585 |
T |
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| Q |
211 |
caaa----tggcatatgtgcagtcctgttctttatctattccagt |
251 |
Q |
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| T |
26405584 |
caaacctgaggcatatgtgcagtcctgttctttatctactccagt |
26405540 |
T |
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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 26590794 - 26590733
Alignment:
| Q |
68 |
taaaatgtggacgtaaa-tatatggtttaaaatgctgtatgcttgggtcactataccctaca |
128 |
Q |
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| T |
26590794 |
taaaatgtggacgtaaaatatatggttcaaaatgttgtatgtttgggtcactataccctaca |
26590733 |
T |
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