View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6709_low_18 (Length: 215)
Name: NF6709_low_18
Description: NF6709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6709_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 29425404 - 29425231
Alignment:
| Q |
19 |
cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgctt |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29425404 |
cagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgctt |
29425305 |
T |
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| Q |
119 |
cttggatgatggttggtgagcagataatgatgat---ggtgaacggcatttgacagagttgttgtgagtgtgag |
189 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
29425304 |
cttggatgatggttggtgagcagatgatgatgatggtggtgaacggcgtttgacagagttgttgtgagtgtgag |
29425231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 1758256 - 1758067
Alignment:
| Q |
19 |
cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgctt |
118 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1758256 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
1758157 |
T |
|
| Q |
119 |
cttggatgatggttggtgagcagataatgatgatggtgaacggcatttgacagagttgttgtgagtgtgagtttgatgatgaagcattgatgatgt |
214 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||| |
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| T |
1758156 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagtttttgtgagag------tgatgatgaagcattgatgatgt |
1758067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 29568361 - 29568559
Alignment:
| Q |
19 |
cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgctt |
118 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
29568361 |
cagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt |
29568460 |
T |
|
| Q |
119 |
cttggatgatggttggtgagcagataatgatgatggtgaacggcatttgacagagttgttgtgagtgtga-gtt--tgatgatgaagcattgatgatgt |
214 |
Q |
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|||||||||| ||||||||||||| |||||||||||||| ||| ||||| |||||| |||||||||||| | | ||||||||||||||||||||||| |
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| T |
29568461 |
cttggatgatagttggtgagcagaagatgatgatggtgaatggcgtttgaaagagtttttgtgagtgtgatgatgatgatgatgaagcattgatgatgt |
29568559 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 29168363 - 29168171
Alignment:
| Q |
19 |
cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgctt |
118 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
29168363 |
cagagacacagcagctaagagcattcccacggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgctt |
29168264 |
T |
|
| Q |
119 |
cttggatgatggttggtgagcagataatgatgatggtgaacggcatttgacagagttgttgtgagtgtgagtttgatgatgaagcattgatgatgt |
214 |
Q |
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||||||||| ||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29168263 |
attggatgatagttggtgagcagaagatgatgatggtgaacgacgtttgacagagttgttgtgagtgtga---tgatgatgaagcattgatgatgt |
29168171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 29569708 - 29569861
Alignment:
| Q |
35 |
aagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgcttcttggatgatggttgg |
134 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
29569708 |
aagagcattgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttgg |
29569807 |
T |
|
| Q |
135 |
tgagcagataatgatgatggtgaacggcatttgacagagttgttgtgagtgtga |
188 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
29569808 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtga |
29569861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 27918742 - 27918589
Alignment:
| Q |
35 |
aagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgcttcttggatgatggttgg |
134 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||| |
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| T |
27918742 |
aagagcgttgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttgg |
27918643 |
T |
|
| Q |
135 |
tgagcagataatgatgatggtgaacggcatttgacagagttgttgtgagtgtga |
188 |
Q |
| |
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|||||||| ||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
27918642 |
tgagcagaagatgatgatggtgaactgcgtttgacagagttgttgtgagtgtga |
27918589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 27521322 - 27521516
Alignment:
| Q |
14 |
aggagcagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaa |
113 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27521322 |
aggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaa |
27521421 |
T |
|
| Q |
114 |
tgcttcttggatgatggttggtgagcagataatgatgatggtgaacggcatttgacagagttgttgtgagtgtgagtttgatgatgaagcattgatgatg |
213 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
27521422 |
tgcttcttggatgatggttggtgggcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtg------tgatgatgaagcattgatgatg |
27521515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 27462108 - 27461919
Alignment:
| Q |
19 |
cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgctt |
118 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27462108 |
cagagacacagcggctaagagcatttccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
27462009 |
T |
|
| Q |
119 |
cttggatgatggttggtgagcagataatgatgatggtgaacggcatttgacagagttgttgtgagtgtgagtttgatgatgaagcattgatgatgt |
214 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
27462008 |
cttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtg------tgatgatgaagcattgatgatgt |
27461919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 27482247 - 27482078
Alignment:
| Q |
19 |
cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgctt |
118 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27482247 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
27482148 |
T |
|
| Q |
119 |
cttggatgatggttggtgagcagataatgatgatggtgaacggcatttgacagagttgttgtgagtgtga |
188 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
27482147 |
cttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtga |
27482078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 18986208 - 18986019
Alignment:
| Q |
19 |
cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgctt |
118 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
18986208 |
cagagacacagcggctaagagtattcccacggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
18986109 |
T |
|
| Q |
119 |
cttggatgatggttggtgagcagataatgatgatggtgaacggcatttgacagagttgttgtgagtgtgagtttgatgatgaagcattgatgatgt |
214 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||| | |||||||| ||||||||||| | ||||||||||||||||||||||| |
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| T |
18986108 |
cttggatgacggttggtgagcagatgatgatgatggtgaacagagtttgacagtgttgttgtgaggg------tgatgatgaagcattgatgatgt |
18986019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 35 - 214
Target Start/End: Complemental strand, 25518576 - 25518400
Alignment:
| Q |
35 |
aagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgcttcttggatgatggttgg |
134 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25518576 |
aagagcattaccacgaagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatggttgg |
25518477 |
T |
|
| Q |
135 |
tgagcagataatgatgatggtgaacggcatttgacagagttgttgtgagtgtgagtttgatgatgaagcattgatgatgt |
214 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
25518476 |
tgaggagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtga---tgatgaccaagcattgatgatgt |
25518400 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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