View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6709_low_2 (Length: 261)
Name: NF6709_low_2
Description: NF6709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6709_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 17567295 - 17567054
Alignment:
| Q |
15 |
tggacatcaattctttcacaaaacttaacggcaattgaagtttgtcttcaaaattcttaatttacaacttagtacttaaatcaaataattttacaaaaca |
114 |
Q |
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| T |
17567295 |
tggacatcaattctttcacaaaacttcacggcaattgaagtttgtcttcaaaattctttatttacaacttagtacttaaatcaaataattttacaaaaca |
17567196 |
T |
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| Q |
115 |
ttaattagctcacgacttaataaaatacaatagaaaacttctcaccaccacggattactaactaaaaacctaaaataactgcattttcgcaaatgcacac |
214 |
Q |
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| T |
17567195 |
ttaattagctcacgacttaataaaatacaatagaaaacttctcatcaccacggattac-----ataaacctaaaataactgcattttcgcaaatgcacac |
17567101 |
T |
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| Q |
215 |
acacaaaaataagtaaaaggtaagtgatcaaatcaagtgaagtataa |
261 |
Q |
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| T |
17567100 |
acacaaaaataagtaaaaggtaagtgatcaaatcaagtgaagtataa |
17567054 |
T |
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