View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6709_low_6 (Length: 333)
Name: NF6709_low_6
Description: NF6709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6709_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 40845986 - 40845753
Alignment:
| Q |
13 |
atgacattctcctttcttcaactctcataagaggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcatgtcctccatggaaa |
112 |
Q |
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| T |
40845986 |
atgacattctcctttcttcaactctcataagaggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcatgtcctccatggaaa |
40845887 |
T |
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| Q |
113 |
cattgtggagaagaagttcactttccctggttttgatgactctggttattctgttgaagaacttggtcatcatgcagggtattatagtcttcctcattcc |
212 |
Q |
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| T |
40845886 |
cattgtggagaagaagttcactttccccggttttgatgactctggttattctgttgaagaacttggtcatcatgcagggtattatagtcttcctcattcc |
40845787 |
T |
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| Q |
213 |
aaagctgctaggtaaatgttttatgtcgtgtgtg |
246 |
Q |
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| T |
40845786 |
aaagctgctaggtaaatgttttatgttgtgtgtg |
40845753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 40841431 - 40841240
Alignment:
| Q |
13 |
atgacattctcctttcttcaactctcataagaggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcatgtcctccatggaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| |
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| T |
40841431 |
atgacattctcctttcttcaactctcataagaggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcttgtcctctatcgaaa |
40841332 |
T |
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| Q |
113 |
cattgtggagaagaagttcactttccctggttttgatgactctggttattctgttgaagaacttggtcatcatgcagggtattatagtcttc |
204 |
Q |
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| T |
40841331 |
cattgtggagaaaaagttcactttccctggttttgatgaccctggttattctgttgaagaacttggtcatcatgcagggtattatagtcttc |
40841240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 40852735 - 40852542
Alignment:
| Q |
35 |
tctcataagaggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcact |
134 |
Q |
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|||||||||||| ||||| |||||||| ||| ||||||||||| ||||||||||||||||||| | || |||||||| ||| ||||||||||||||||| |
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| T |
40852735 |
tctcataagagggcttaatctttttccaaaagattccataaacacaccagagaatgatcctcattttcttcatggaaatattatggagaagaagttcact |
40852636 |
T |
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| Q |
135 |
ttccctggttttgatgactctggttattctgttgaagaacttggtcatcatgcagggtattatagtcttcctcattccaaagctgctaggtaaa |
228 |
Q |
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| T |
40852635 |
ttccctggttttgttgactctggtgcttctgttgaagaacttggtcatcatgcaggctattatcgtcttcctcattccaaagctgcaaggtaaa |
40852542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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