View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6709_low_9 (Length: 255)
Name: NF6709_low_9
Description: NF6709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6709_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 47819620 - 47819845
Alignment:
| Q |
17 |
agttggctcttcaacggagtgacattttgagtggaggagggagttttttgattgggaggagcaactaatagggaatcttttgggtgatttggaggatatg |
116 |
Q |
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| T |
47819620 |
agttggctcttcaacggagtgacattttgagtggaggagggagttttttgattgggaggagcaactaatagggaatcttttgggtgatttggaggatatg |
47819719 |
T |
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| Q |
117 |
aggtggtcgcatgtggaggataggtggaggtgggggttggaagagtccggaatgttctcagttaaatctacatatggcaaattagaggcggttgtggtta |
216 |
Q |
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| T |
47819720 |
aggtggtcgcatgtggaggataggtggaggtgggggttggaagagtctggaatgttctcagttaaatctacatatggcaaattagaggcggttgtggtta |
47819819 |
T |
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| Q |
217 |
gggaagatttgtggagtgtggaggag |
242 |
Q |
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| T |
47819820 |
gggaagatttgtggagtgtggaggag |
47819845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 234
Target Start/End: Original strand, 28571171 - 28571383
Alignment:
| Q |
21 |
ggctcttcaacggagtgacattttgagtggaggagggagttttttgattgggaggagcaactaatagggaatcttttgggtgatttggaggatatgaggt |
120 |
Q |
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| T |
28571171 |
ggctcttcaacggagtcgcgttttgagtggaggcgggacatttttgattgggaggagcaact-cttccaaatctattgctagatttggaaggtatgtttt |
28571269 |
T |
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| Q |
121 |
ggtcgcatgtggaggataggtggaggtgggggttggaagagtccggaatgttctcagttaaatctacatatggcaaattagaggcggttgtggttaggga |
220 |
Q |
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| T |
28571270 |
ggtctcatgaggaagataggtggaagtggggtttggaggagtcggggatgttttccgttaagtcatcatatggaaaattagagggcattgtgttgacgga |
28571369 |
T |
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| Q |
221 |
agatttgtggagtg |
234 |
Q |
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| T |
28571370 |
agatttctggagtg |
28571383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 12826067 - 12825934
Alignment:
| Q |
29 |
aacggagtgacattttgagtggaggagggagttttttgattgggaggagcaactaatagggaatcttttgggtgatttggaggatatgaggtggtcgcat |
128 |
Q |
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|||| |||| ||||| |||||||| ||||||||||||| |||||||||||||||| | | || ||| ||| |||||||||| ||||||||||||| ||| |
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| T |
12826067 |
aacgaagtggcatttcgagtggagaagggagttttttggttgggaggagcaactatttgtgagtctcttgaatgatttggagaatatgaggtggtctcat |
12825968 |
T |
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| Q |
129 |
gtggaggataggtggaggtgggggttggaagagt |
162 |
Q |
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| T |
12825967 |
gaggaggataggtggcggtggggtttggaagagt |
12825934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 234
Target Start/End: Original strand, 24188964 - 24189177
Alignment:
| Q |
21 |
ggctcttcaacggagtgacattttgagtggaggagggagttttttgattgggaggagcaactaatagggaatcttttgggtgatttggaggatatgaggt |
120 |
Q |
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|||||||||| |||||| |||||||||||||| |||| ||||||||||||||||||||||| | | ||||| |||| |||||||| | |||| | |
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| T |
24188964 |
ggctcttcaagggagtggcattttgagtggagacgggatttttttgattgggaggagcaactcttcgcaaatctattggtagatttggaaggcatgactt |
24189063 |
T |
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| Q |
121 |
ggtcgcatgtggaggataggtggaggtgggggttggaagagtccggaatgttctcagttaaatctacatatggcaaattagaggcggttgtggttaggga |
220 |
Q |
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|||| |||| ||| |||||||||| |||||| || || ||||| || ||||| || ||||| || |||||||| |||||||||| ||||| ||||| |
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| T |
24189064 |
ggtctcatgaggaagataggtggaagtggggtttagaggagtcggggatgttttctgttaagtcaacatatgggaaattagagggccttgtgtcgaggga |
24189163 |
T |
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| Q |
221 |
agatttgtggagtg |
234 |
Q |
| |
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||| |||||||||| |
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| T |
24189164 |
agaattgtggagtg |
24189177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 42749442 - 42749402
Alignment:
| Q |
42 |
tttgagtggaggagggagttttttgattgggaggagcaact |
82 |
Q |
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| T |
42749442 |
tttgattggagatgggagttttttgattgggaggagcaact |
42749402 |
T |
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