View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6711_high_3 (Length: 487)

Name: NF6711_high_3
Description: NF6711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6711_high_3
NF6711_high_3
[»] chr8 (9 HSPs)
chr8 (19-485)||(42568499-42568959)
chr8 (186-267)||(40356767-40356850)
chr8 (177-221)||(6526265-6526309)
chr8 (177-221)||(42597345-42597389)
chr8 (177-240)||(14482125-14482190)
chr8 (177-223)||(40280287-40280333)
chr8 (177-221)||(11000643-11000687)
chr8 (231-267)||(31167866-31167902)
chr8 (177-221)||(40598935-40598979)
[»] scaffold0024 (2 HSPs)
scaffold0024 (188-267)||(23807-23888)
scaffold0024 (177-221)||(27520-27564)
[»] chr2 (11 HSPs)
chr2 (186-270)||(17952792-17952878)
chr2 (177-232)||(42907290-42907347)
chr2 (182-233)||(1939419-1939470)
chr2 (180-223)||(31461380-31461423)
chr2 (207-266)||(26484196-26484257)
chr2 (177-223)||(32098390-32098436)
chr2 (189-239)||(32837235-32837287)
chr2 (177-221)||(39567847-39567891)
chr2 (177-221)||(40758967-40759011)
chr2 (177-221)||(40837510-40837554)
chr2 (186-239)||(43530202-43530257)
[»] chr5 (17 HSPs)
chr5 (177-272)||(4855589-4855686)
chr5 (221-267)||(35037042-35037088)
chr5 (186-271)||(11095560-11095647)
chr5 (188-240)||(26516221-26516275)
chr5 (177-223)||(465896-465942)
chr5 (177-219)||(10363696-10363738)
chr5 (177-223)||(11615450-11615496)
chr5 (177-240)||(35095865-35095930)
chr5 (221-262)||(38492502-38492543)
chr5 (188-224)||(5563645-5563681)
chr5 (180-245)||(6738492-6738559)
chr5 (177-225)||(7319093-7319141)
chr5 (177-221)||(7853602-7853646)
chr5 (228-272)||(18232877-18232921)
chr5 (177-221)||(18897756-18897800)
chr5 (177-221)||(39128583-39128627)
chr5 (177-221)||(40097485-40097529)
[»] chr4 (10 HSPs)
chr4 (180-232)||(6364080-6364134)
chr4 (186-265)||(969436-969517)
chr4 (177-239)||(30024624-30024688)
chr4 (186-270)||(19422311-19422397)
chr4 (188-260)||(24160588-24160662)
chr4 (177-219)||(17884014-17884056)
chr4 (189-223)||(29373981-29374015)
chr4 (177-219)||(39438618-39438660)
chr4 (177-221)||(3155547-3155591)
chr4 (177-221)||(34368821-34368865)
[»] chr7 (12 HSPs)
chr7 (188-271)||(5005900-5005985)
chr7 (177-259)||(35536011-35536095)
chr7 (177-217)||(30456532-30456572)
chr7 (177-221)||(43152984-43153028)
chr7 (172-239)||(32791828-32791897)
chr7 (181-223)||(42656457-42656499)
chr7 (175-232)||(17942076-17942133)
chr7 (177-222)||(39591549-39591594)
chr7 (228-269)||(48496598-48496639)
chr7 (187-272)||(7513525-7513612)
chr7 (177-221)||(28178913-28178957)
chr7 (228-276)||(46056143-46056191)
[»] chr6 (11 HSPs)
chr6 (177-223)||(2205650-2205696)
chr6 (177-221)||(27893991-27894035)
chr6 (177-221)||(29269840-29269884)
chr6 (181-223)||(264313-264355)
chr6 (177-244)||(9027496-9027565)
chr6 (179-223)||(4248900-4248944)
chr6 (177-241)||(9093638-9093705)
chr6 (177-221)||(10728576-10728620)
chr6 (177-221)||(20671947-20671991)
chr6 (177-221)||(24836281-24836325)
chr6 (177-221)||(29274311-29274355)
[»] chr3 (22 HSPs)
chr3 (177-240)||(32095273-32095338)
chr3 (177-238)||(905052-905115)
chr3 (177-221)||(2128333-2128377)
chr3 (171-218)||(2719416-2719463)
chr3 (177-220)||(15304429-15304472)
chr3 (188-272)||(48528469-48528555)
chr3 (186-237)||(34958254-34958307)
chr3 (178-232)||(139916-139972)
chr3 (180-221)||(1395615-1395656)
chr3 (186-227)||(33883840-33883881)
chr3 (182-267)||(25964338-25964425)
chr3 (177-225)||(30956708-30956756)
chr3 (177-225)||(30972520-30972568)
chr3 (180-265)||(32064338-32064425)
chr3 (186-267)||(41159005-41159088)
chr3 (177-221)||(42808923-42808967)
chr3 (177-221)||(42809245-42809289)
chr3 (177-225)||(46778309-46778357)
chr3 (186-267)||(48588561-48588644)
chr3 (177-221)||(49586998-49587042)
chr3 (186-267)||(52450143-52450226)
chr3 (177-221)||(52618947-52618991)
[»] chr1 (10 HSPs)
chr1 (186-265)||(52286576-52286657)
chr1 (186-272)||(41638401-41638489)
chr1 (178-218)||(4549813-4549853)
chr1 (177-225)||(24915133-24915181)
chr1 (177-221)||(34952159-34952203)
chr1 (236-268)||(35666982-35667014)
chr1 (177-221)||(36151587-36151631)
chr1 (177-221)||(46499936-46499980)
chr1 (177-221)||(49517014-49517058)
chr1 (177-221)||(50319236-50319280)
[»] scaffold0654 (1 HSPs)
scaffold0654 (177-267)||(6719-6812)
[»] scaffold0014 (1 HSPs)
scaffold0014 (177-267)||(116638-116731)


Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 485
Target Start/End: Complemental strand, 42568959 - 42568499
Alignment:
Q  19 ggtttagcaggagaagacaagaatgacggcggcgtaaacagtgagctatggcaagcttgtgctggtcctcttgtcaatcttcctttacctggtacccatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42568959 ggtttagcaggagaagacaagaatgacggcggcgtaaacagtgagctatggcaagcttgtgctggtcctcttgtcaatcttcctttacctggtacccatg 42568860  T
Q  119 tcgtttacttccctcaaggccactccgaacaagtaaactcacctcttatttcaaacacaacaatttcactttattttatcttctgttttagaaatagctt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42568859 tcgtttacttccctcaaggccactccgaacaagtaaactcacctcttatttcaaacacaacaatttcactttattttatcttctgttttagaaatagctt 42568760  T
Q  219 atataagtgcttatatgataagtgtttgattaagttgtttatccaaacatggccgtattataattataattataattacattcattttgtttttgtttca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||    
T  42568759 atataagtgcttatatgataagtgtttgattaagttgtttatccaaacatggccgtattataattata------attacattcattttgtttttgtttca 42568666  T
Q  319 ggttgcagcatctttgaagaaagatggggatgtccaagtaccaaactattccaatcttccctccaagttgccttgtactcttcacagtctcaccttacat 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42568665 ggttgcagcatctttgaagaaagatggggatgtccaagtaccaaactattccaatcttccctccaagttgccttgtactcttcacagtctcaccttacat 42568566  T
Q  419 gtatgctggatttttcattttaattgtttatcttatacaatagttttctgtatcgtaatattcttcg 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42568565 gtatgctggatttttcattttaattgtttatcttatacaatagttttctgtatcgtaattttcttcg 42568499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 40356850 - 40356767
Alignment:
Q  186 actttattttatcttctgttttagaaatagcttata--taagtgcttatatgataagtgtttgattaagttgtttatccaaaca 267  Q
    ||||||||||||||| | || || ||||||||||||  ||||  ||||||||| |||||||| |||||||||||||| ||||||    
T  40356850 actttattttatcttttattatataaatagcttatagataagcacttatatgacaagtgtttaattaagttgtttattcaaaca 40356767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 6526265 - 6526309
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||    
T  6526265 aacaatttcactttattttatcttctgttatagagataacttata 6526309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 42597389 - 42597345
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| |||| |||||||||||||||    
T  42597389 aacaattttactttattttatcttttgttatagaaatagcttata 42597345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 14482190 - 14482125
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttat--ataagtgcttatatgataag 240  Q
    |||||||| ||||||||||||||| |||| ||||||||| ||||  |||||  |||||||||||||    
T  14482190 aacaatttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataag 14482125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 40280287 - 40280333
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttatata 223  Q
    |||||||| ||||||||||||||| |||| |||||||| ||||||||    
T  40280287 aacaattttactttattttatcttttgttgtagaaataacttatata 40280333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 11000643 - 11000687
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| |||| | |||||||||||||    
T  11000643 aacaatttgactttattttatcttttgttatggaaatagcttata 11000687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 31167902 - 31167866
Alignment:
Q  231 atatgataagtgtttgattaagttgtttatccaaaca 267  Q
    |||||||||||| || |||||||||||||||||||||    
T  31167902 atatgataagtgcttaattaagttgtttatccaaaca 31167866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 40598935 - 40598979
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||  ||||| ||||||||||||||||||||    
T  40598935 aacaatttaactttattccatcttttgttttagaaatagcttata 40598979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 23888 - 23807
Alignment:
Q  188 tttattttatcttctgttttagaaatagcttatat--aagtgcttatatgataagtgtttgattaagttgtttatccaaaca 267  Q
    ||||||| ||||| |||| ||||||||||||||||  ||| |||| |||||||||||||| |||||||||||||||||||||    
T  23888 tttatttcatcttttgttatagaaatagcttatatgtaagcgcttttatgataagtgtttaattaagttgtttatccaaaca 23807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 27564 - 27520
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||    
T  27564 aacaatttgactttattttatcttctgttatagaaataacttata 27520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 17952792 - 17952878
Alignment:
Q  186 actttattttatcttctgttttagaaatagct--tatataagtgcttatatgataagtgtttgattaagttgtttatccaaacatgg 270  Q
    ||||||||||||||| |||| |||||||||||  ||||||||  ||||||||||||||| || ||||| || |||| ||||||||||    
T  17952792 actttattttatcttttgttatagaaatagcttatatataagctcttatatgataagtgctttattaaattttttaaccaaacatgg 17952878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 42907347 - 42907290
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata--taagtgcttat 232  Q
    |||||||| |||||||||| ||||||||| |||||||||||||||  |||||||||||    
T  42907347 aacaatttaactttattttttcttctgttatagaaatagcttatatgtaagtgcttat 42907290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 1939419 - 1939470
Alignment:
Q  182 tttcactttattttatcttctgttttagaaatagcttatataagtgcttata 233  Q
    ||||||||||||||||||| |||| |||||||| |||||||| | |||||||    
T  1939419 tttcactttattttatcttttgttatagaaataacttatatatgcgcttata 1939470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 31461423 - 31461380
Alignment:
Q  180 aatttcactttattttatcttctgttttagaaatagcttatata 223  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||    
T  31461423 aatttgactttattttatcttttgttatagaaatagcttatata 31461380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 26484196 - 26484257
Alignment:
Q  207 tagaaatagcttat--ataagtgcttatatgataagtgtttgattaagttgtttatccaaac 266  Q
    ||||||||||||||  |||||  |||||||||||| || || ||||||||||||||||||||    
T  26484196 tagaaatagcttatccataagcacttatatgataaatgattaattaagttgtttatccaaac 26484257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 32098390 - 32098436
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttatata 223  Q
    |||| ||| ||||||||||||||| |||| |||||||||||||||||    
T  32098390 aacactttgactttattttatcttttgttatagaaatagcttatata 32098436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 32837287 - 32837235
Alignment:
Q  189 ttattttatcttctgttttagaaatagcttat--ataagtgcttatatgataa 239  Q
    |||||||||||| |||| ||||||||| ||||  |||||||||||||||||||    
T  32837287 ttattttatcttttgttatagaaatagattatgcataagtgcttatatgataa 32837235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 39567891 - 39567847
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| |||| |||||||| ||||||    
T  39567891 aacaatttaactttattttatcttttgttatagaaatatcttata 39567847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 40759011 - 40758967
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| |||| | |||||||||||||    
T  40759011 aacaatttgactttattttatcttttgttatggaaatagcttata 40758967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 40837510 - 40837554
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| |||||| |||||||| |||| |||||||||||||||    
T  40837510 aacaatttgactttaatttatcttttgttatagaaatagcttata 40837554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 43530202 - 43530257
Alignment:
Q  186 actttattttatcttctgttttagaaatagcttat--ataagtgcttatatgataa 239  Q
    ||||||||||||||| |  | ||||||||||||||  |||||||||||||||||||    
T  43530202 actttattttatcttgtcctatagaaatagcttattcataagtgcttatatgataa 43530257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 177 - 272
Target Start/End: Complemental strand, 4855686 - 4855589
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata--taagtgcttatatgataagtgtttgattaagttgtttatccaaacatggcc 272  Q
    |||||||| |||||||||||| || |||| || |||||||| |||  ||||| |||||   |||||| ||| ||||||||||||||||||||||||||    
T  4855686 aacaatttaactttattttattttttgttataaaaatagctaatacataagtacttatgctataagtatttaattaagttgtttatccaaacatggcc 4855589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 35037042 - 35037088
Alignment:
Q  221 ataagtgcttatatgataagtgtttgattaagttgtttatccaaaca 267  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||    
T  35037042 ataagcgcttatatgataagtgtttcattaaattgtttatccaaaca 35037088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 11095560 - 11095647
Alignment:
Q  186 actttattttatcttctgttttagaaatagcttata--taagtgcttatatgataagtgtttgattaagttgtttatccaaacatggc 271  Q
    |||||||| |||| | |||| ||||||||| |||||  |||   |||||||| |||||||||  ||||||||||||||||||||||||    
T  11095560 actttattgtatcatttgttatagaaatagtttatacataatcacttatatggtaagtgtttagttaagttgtttatccaaacatggc 11095647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 26516275 - 26516221
Alignment:
Q  188 tttattttatcttctgttttagaaatagcttat--ataagtgcttatatgataag 240  Q
    ||||||||||||| |||||||||||||||||||  |||||  |||||||||||||    
T  26516275 tttattttatcttttgttttagaaatagcttatacataagcacttatatgataag 26516221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 465942 - 465896
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttatata 223  Q
    |||||||| ||||||||||||||| |||  |||||||||||||||||    
T  465942 aacaatttaactttattttatcttttgtcatagaaatagcttatata 465896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 10363738 - 10363696
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagctta 219  Q
    |||||||| ||||||||||||||| |||| |||||||||||||    
T  10363738 aacaatttaactttattttatcttttgttatagaaatagctta 10363696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 11615496 - 11615450
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttatata 223  Q
    |||||||| ||||||||||||||| |||| || ||||||||||||||    
T  11615496 aacaatttgactttattttatcttttgttataaaaatagcttatata 11615450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 35095865 - 35095930
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagctt--atataagtgcttatatgataag 240  Q
    |||||||| ||||||||||||||| |||| ||||||||| ||  |||||||  |||||||||||||    
T  35095865 aacaatttgactttattttatcttttgttatagaaatagtttaaatataagcacttatatgataag 35095930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 38492502 - 38492543
Alignment:
Q  221 ataagtgcttatatgataagtgtttgattaagttgtttatcc 262  Q
    ||||| |||||||||||||| |||| ||||||||||||||||    
T  38492502 ataagagcttatatgataagcgtttaattaagttgtttatcc 38492543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 5563681 - 5563645
Alignment:
Q  188 tttattttatcttctgttttagaaatagcttatataa 224  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  5563681 tttattttatcttttgttatagaaatagcttatataa 5563645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 6738492 - 6738559
Alignment:
Q  180 aatttcactttattttatcttctgttttagaaatagcttata--taagtgcttatatgataagtgttt 245  Q
    ||||| |||||||||| |||| | || | |||||||||||||  ||||| ||||||||||||||||||    
T  6738492 aatttgactttattttgtcttttattattgaaatagcttatacataagtacttatatgataagtgttt 6738559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 7319093 - 7319141
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttatataag 225  Q
    ||||||||||||||||||||| || ||  ||||||||||||||| ||||    
T  7319093 aacaatttcactttattttatattttgcgttagaaatagcttatgtaag 7319141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 7853646 - 7853602
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| |||| ||||||||| |||||    
T  7853646 aacaatttaactttattttatcttttgttatagaaatagtttata 7853602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 18232877 - 18232921
Alignment:
Q  228 cttatatgataagtgtttgattaagttgtttatccaaacatggcc 272  Q
    ||||||||||||||||||||||||  ||||||||  |||||||||    
T  18232877 cttatatgataagtgtttgattaaactgtttatcttaacatggcc 18232921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 18897756 - 18897800
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| |||| |||||||||||||| ||||||||| ||||||    
T  18897756 aacaatttgacttaattttatcttctgtcttagaaataacttata 18897800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 39128627 - 39128583
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| |||| ||||| |||||||||    
T  39128627 aacaatttgactttattttatcttttgttatagaattagcttata 39128583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 40097485 - 40097529
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||| |||||||||||||||| |||||||| ||||||    
T  40097485 aacaatttaactctattttatcttctgttatagaaataacttata 40097529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 6364134 - 6364080
Alignment:
Q  180 aatttcactttattttatcttctgttttagaaatagcttat--ataagtgcttat 232  Q
    ||||||||||||||||||||| |||| ||||||||||||||  ||||||||||||    
T  6364134 aatttcactttattttatcttttgttatagaaatagcttatacataagtgcttat 6364080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 969436 - 969517
Alignment:
Q  186 actttattttatcttctgttttagaaatagcttata--taagtgcttatatgataagtgtttgattaagttgtttatccaaa 265  Q
    ||||||||||| ||| | || ||||||| |||||||  ||||  ||||||||||||| | ||||||||||||||||||||||    
T  969436 actttattttaccttttattatagaaattgcttatagataagcacttatatgataagcgcttgattaagttgtttatccaaa 969517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 30024688 - 30024624
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttat--ataagtgcttatatgataa 239  Q
    |||||||| ||||||||||||||| |||| |||||||| |||||  |||||| ||||||||||||    
T  30024688 aacaattttactttattttatcttttgttatagaaataacttatgcataagtacttatatgataa 30024624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 19422397 - 19422311
Alignment:
Q  186 actttattttatcttctgttttagaaatagcttata--taagtgcttatatgataagtgtttgattaagttgtttatccaaacatgg 270  Q
    |||||||| |||||| |||| |||||||| ||||||  ||||   |||||||||||| | || |||||| |||||||||||||||||    
T  19422397 actttattatatcttttgttatagaaataacttatacataagcatttatatgataagcgcttaattaagctgtttatccaaacatgg 19422311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 24160588 - 24160662
Alignment:
Q  188 tttattttatcttctgttttagaaatagcttat--ataagtgcttatatgataagtgtttgattaagttgtttat 260  Q
    ||||| ||||||| |||| |||||| |||||||  |||||  ||||||||||||| |||| ||||||||||||||    
T  24160588 tttatattatcttttgttatagaaaaagcttatttataagcacttatatgataagcgtttaattaagttgtttat 24160662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 17884056 - 17884014
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagctta 219  Q
    |||||||| ||||||||||||||| |||| |||||||||||||    
T  17884056 aacaatttaactttattttatcttttgttatagaaatagctta 17884014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 29373981 - 29374015
Alignment:
Q  189 ttattttatcttctgttttagaaatagcttatata 223  Q
    ||||||||||||||||| |||||||||||||||||    
T  29373981 ttattttatcttctgttatagaaatagcttatata 29374015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 39438618 - 39438660
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagctta 219  Q
    |||||||| ||||||||||||||| |||| |||||||||||||    
T  39438618 aacaatttgactttattttatcttatgttatagaaatagctta 39438660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 3155591 - 3155547
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| || | |||||||||||||||    
T  3155591 aacaatttaactttattttatcttttgctatagaaatagcttata 3155547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 34368865 - 34368821
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||| ||||||||| |||| |||||||||||||||    
T  34368865 aacaatttgactttgttttatcttttgttatagaaatagcttata 34368821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 5005900 - 5005985
Alignment:
Q  188 tttattttatcttctgttttagaaatagcttatat--aagtgcttatatgataagtgtttgattaagttgtttatccaaacatggc 271  Q
    |||| |||||||| |||| ||||||||||||||||  |||  |||| |||||||| |||| |||||||||| || |||||||||||    
T  5005900 tttactttatcttttgttgtagaaatagcttatatgtaagcacttagatgataagcgtttaattaagttgtgtaaccaaacatggc 5005985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 35536095 - 35536011
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttat--ataagtgcttatatgataagtgtttgattaagttgttta 259  Q
    |||||||| ||||||||||||||| |||| ||||||||||||||  |||||   |||||||||||| | |  |||||||||||||    
T  35536095 aacaatttgactttattttatcttatgttatagaaatagcttatacataagcctttatatgataagcgctcaattaagttgttta 35536011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 30456532 - 30456572
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagct 217  Q
    |||||||| ||||||||||||||| ||||||||||||||||    
T  30456532 aacaatttgactttattttatcttttgttttagaaatagct 30456572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 43152984 - 43153028
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| |||| |||||||||||||||    
T  43152984 aacaatttaactttattttatcttttgttatagaaatagcttata 43153028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 32791828 - 32791897
Alignment:
Q  172 aacacaacaatttcactttattttatcttctgttttagaaatagctta--tataagtgcttatatgataa 239  Q
    ||||||| ||||||||||||||||||||| |||  ||||| |||||||  |||||| | |||||||||||    
T  32791828 aacacaataatttcactttattttatcttgtgtaatagaagtagcttatttataagaggttatatgataa 32791897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 42656499 - 42656457
Alignment:
Q  181 atttcactttattttatcttctgttttagaaatagcttatata 223  Q
    |||| ||||||||||||||| |||| |||||||||||||||||    
T  42656499 atttgactttattttatcttttgttatagaaatagcttatata 42656457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 17942133 - 17942076
Alignment:
Q  175 acaacaatttcactttattttatcttctgttttagaaatagcttatataagtgcttat 232  Q
    |||||||||| |||| |||||||||| ||||||| |||||| | | ||||||||||||    
T  17942133 acaacaatttaacttcattttatcttttgttttaaaaatagttaagataagtgcttat 17942076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 39591549 - 39591594
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttatat 222  Q
    |||||||| ||||||||||||||| |||| |||||||| |||||||    
T  39591549 aacaatttgactttattttatcttttgttatagaaataacttatat 39591594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 48496639 - 48496598
Alignment:
Q  228 cttatatgataagtgtttgattaagttgtttatccaaacatg 269  Q
    ||||||||||||||| || || ||||||||||||||||||||    
T  48496639 cttatatgataagtgcttaatcaagttgtttatccaaacatg 48496598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 7513612 - 7513525
Alignment:
Q  187 ctttattttatcttctgttttagaaatagcttat--ataagtgcttatatgataagtgtttgattaagttgtttatccaaacatggcc 272  Q
    |||||||||||||| ||| ||| |||||||||||  |||||  |||||||| ||  || ||  ||||||| |||||||||||||||||    
T  7513612 ctttattttatcttttgtcttaaaaatagcttatacataagcacttatatggtacatgcttagttaagttttttatccaaacatggcc 7513525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 28178957 - 28178913
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||| | ||||||||||||||| |||| |||||||||||||||    
T  28178957 aacaatatgactttattttatcttttgttatagaaatagcttata 28178913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 46056143 - 46056191
Alignment:
Q  228 cttatatgataagtgtttgattaagttgtttatccaaacatggccgtat 276  Q
    |||| ||||||| || || |||||||||||||||||||||||| |||||    
T  46056143 cttaaatgataaatgcttaattaagttgtttatccaaacatggtcgtat 46056191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 2205650 - 2205696
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttatata 223  Q
    |||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  2205650 aacaatttgactttgttttatcttttgttttagaaatagcttatata 2205696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 27894035 - 27893991
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| |||||||||||| ||||||| |||||||||||||||    
T  27894035 aacaatttgactttattttatattctgttgtagaaatagcttata 27893991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 29269884 - 29269840
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| |||||||||||||||||||| ||||||||| |||||    
T  29269884 aacaatttgactttattttatcttctgttatagaaatagtttata 29269840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 264355 - 264313
Alignment:
Q  181 atttcactttattttatcttctgttttagaaatagcttatata 223  Q
    |||| ||||||||||||||| || |||||||||||||||||||    
T  264355 atttaactttattttatcttttgctttagaaatagcttatata 264313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 9027565 - 9027496
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttat--ataagtgcttatatgataagtgtt 244  Q
    |||| ||| ||||||||||||||||| || ||||||||||||||  |||||  ||||||| |||||||||    
T  9027565 aacagtttgactttattttatcttctattgtagaaatagcttatagataagcacttatataataagtgtt 9027496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 4248944 - 4248900
Alignment:
Q  179 caatttcactttattttatcttctgttttagaaatagcttatata 223  Q
    |||||| ||||||||||||||| |||| | |||||||||||||||    
T  4248944 caatttgactttattttatcttttgttattgaaatagcttatata 4248900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 9093638 - 9093705
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttat--ataagtgcttat-atgataagt 241  Q
    |||||||| ||||||||||||||| || | ||||||||||||||  ||||| |||||| |||||||||    
T  9093638 aacaatttaactttattttatcttttgatatagaaatagcttatccataagcgcttatcatgataagt 9093705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 10728620 - 10728576
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| || |||||||||| ||||||    
T  10728620 aacaatttaactttattttatcttttgctttagaaataacttata 10728576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 20671947 - 20671991
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| || | |||||||||||||||    
T  20671947 aacaatttgactttattttatcttttgatctagaaatagcttata 20671991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 24836281 - 24836325
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| |||| |||||||| ||||||    
T  24836281 aacaatttgactttattttatcttttgttatagaaataacttata 24836325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 29274311 - 29274355
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| || | |||||||||||||||    
T  29274311 aacaatttgactttattttatcttttgctatagaaatagcttata 29274355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 32095273 - 32095338
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttatata--agtgcttatatgataag 240  Q
    |||||||| |||| |||||||||| |||| |||||||| ||||||||  |||||||||||||||||    
T  32095273 aacaatttaacttaattttatcttttgttatagaaataacttatatatgagtgcttatatgataag 32095338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 905052 - 905115
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata--taagtgcttatatgata 238  Q
    ||||| || ||||||||||||||| |||| |||||||||||||||  |||| ||||||||||||    
T  905052 aacaaattgactttattttatcttttgttatagaaatagcttatacttaagcgcttatatgata 905115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 2128333 - 2128377
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| |||| |||||||||||||||    
T  2128333 aacaatttaactttattttatcttttgttatagaaatagcttata 2128377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 2719463 - 2719416
Alignment:
Q  171 aaacacaacaatttcactttattttatcttctgttttagaaatagctt 218  Q
    ||||| ||||||||||||||||||||| || || ||||||||||||||    
T  2719463 aaacaaaacaatttcactttattttatattttgctttagaaatagctt 2719416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 15304429 - 15304472
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttat 220  Q
    |||||||| ||||||||||||||| |||| ||||||||||||||    
T  15304429 aacaatttaactttattttatcttttgttatagaaatagcttat 15304472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 48528555 - 48528469
Alignment:
Q  188 tttattttatcttctgttttagaaatagcttata--taagtgcttatatgataagtgtttgattaagttgtttatccaaacatggcc 272  Q
    |||||||||| |  |||| |||||||||||||||  ||||| |||||||||||||   || ||| ||||||||||||||||| ||||    
T  48528555 tttattttatttcttgttatagaaatagcttatacataagtacttatatgataagctcttaattcagttgtttatccaaacagggcc 48528469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 34958307 - 34958254
Alignment:
Q  186 actttattttatcttctgttttagaaatagcttat--ataagtgcttatatgat 237  Q
    ||||||||||||||| |||| ||||||||| ||||  |||||||||||||||||    
T  34958307 actttattttatcttgtgttatagaaatagtttattcataagtgcttatatgat 34958254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 139972 - 139916
Alignment:
Q  178 acaatttcactttattttatcttctgttttagaaatagcttat--ataagtgcttat 232  Q
    ||||||| ||||||||||||||| |||  ||||||||||||||  ||||||||||||    
T  139972 acaattttactttattttatcttgtgtaatagaaatagcttattcataagtgcttat 139916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 1395656 - 1395615
Alignment:
Q  180 aatttcactttattttatcttctgttttagaaatagcttata 221  Q
    ||||| ||||||||||||||| |||| |||||||||||||||    
T  1395656 aatttgactttattttatcttttgttatagaaatagcttata 1395615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 33883840 - 33883881
Alignment:
Q  186 actttattttatcttctgttttagaaatagcttatataagtg 227  Q
    ||||||||||||||| |||| ||||||||||||||| |||||    
T  33883840 actttattttatcttatgttatagaaatagcttatacaagtg 33883881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 25964425 - 25964338
Alignment:
Q  182 tttcactttattttatcttctgttttagaaatagcttat--ataagtgcttatatgataagtgtttgattaagttgtttatccaaaca 267  Q
    ||||| ||||||||||||| |||| || |||||||||||  | |||  |||||||||||||   || |||||||||||||||| ||||    
T  25964425 tttcaatttattttatcttttgttataaaaatagcttatacaaaagaacttatatgataagcacttaattaagttgtttatcccaaca 25964338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 30956708 - 30956756
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttatataag 225  Q
    |||||||| ||||||||||||||| || | |||||||||||||| ||||    
T  30956708 aacaatttaactttattttatcttttgctatagaaatagcttatgtaag 30956756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 30972520 - 30972568
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttatataag 225  Q
    |||||||| ||||||||||||||| || | |||||||||||||| ||||    
T  30972520 aacaatttaactttattttatcttttgctatagaaatagcttatgtaag 30972568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 32064425 - 32064338
Alignment:
Q  180 aatttcactttattttatcttctgttttagaaatagcttatata--agtgcttatatgataagtgtttgattaagttgtttatccaaa 265  Q
    ||||| |||||||||||| || ||||||||||| | |||||| |  ||  || ||||||||||||||| |||||| ||| ||||||||    
T  32064425 aatttgactttattttattttttgttttagaaagaacttatacattagcactaatatgataagtgtttcattaagatgtctatccaaa 32064338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 41159088 - 41159005
Alignment:
Q  186 actttattttatcttctgttttagaaatagcttata--taagtgcttatatgataagtgtttgattaagttgtttatccaaaca 267  Q
    |||||||||||||||  ||| ||| |||| ||||||  ||||  |||||| |||||| |||| ||||||||| |||||||||||    
T  41159088 actttattttatctttagttataggaataacttatacataagcacttatacgataagcgtttaattaagttggttatccaaaca 41159005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 42808967 - 42808923
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| |||| |||||| ||||||||    
T  42808967 aacaatttaactttattttatcttttgttatagaaacagcttata 42808923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 42809289 - 42809245
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||| ||||||||||| |||| |||||||||||||||    
T  42809289 aacaatttaactatattttatcttttgttatagaaatagcttata 42809245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 46778309 - 46778357
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttatataag 225  Q
    |||||||| ||||||||||||||  || | |||||||||||||||||||    
T  46778309 aacaatttaactttattttatctcttgctatagaaatagcttatataag 46778357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 48588644 - 48588561
Alignment:
Q  186 actttattttatcttctgttttagaaatagcttatat--aagtgcttatatgataagtgtttgattaagttgtttatccaaaca 267  Q
    |||||||||||| || | || |||||||| |||||||  |||  ||||||||||||| | || |||||||||||||| ||||||    
T  48588644 actttattttatattttattatagaaataacttatatgtaagctcttatatgataagagcttaattaagttgtttattcaaaca 48588561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 49586998 - 49587042
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||| ||| ||||||||||||||| |||| |||||||||||||||    
T  49586998 aacagtttgactttattttatcttttgttatagaaatagcttata 49587042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 52450143 - 52450226
Alignment:
Q  186 actttattttatcttctgttttagaaatagcttat--ataagtgcttatatgataagtgtttgattaagttgtttatccaaaca 267  Q
    ||||||||| ||||| |||| ||||||| ||||||  |||||| ||| ||||||||    ||||||||| ||||||||||||||    
T  52450143 actttatttcatcttttgttatagaaattgcttatgcataagtacttgtatgataaacacttgattaagctgtttatccaaaca 52450226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 52618991 - 52618947
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||| ||| | ||||||||||||||||||||    
T  52618991 aacaatttaactttatttaatcatttgttttagaaatagcttata 52618947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 52286657 - 52286576
Alignment:
Q  186 actttattttatcttctgttttagaaatagcttat--ataagtgcttatatgataagtgtttgattaagttgtttatccaaa 265  Q
    ||||||||||||||| |||| |||||||| |||||  ||||| |||||||||||||| | |  ||||||| |||||||||||    
T  52286657 actttattttatcttttgttgtagaaatatcttattcataagcgcttatatgataagcgctaaattaagtggtttatccaaa 52286576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 41638401 - 41638489
Alignment:
Q  186 actttattttatcttctgttttagaaatagcttata--taagtgcttatatgataagtgtttgattaagttgtttatccaaacatggcc 272  Q
    ||||||||||||||| |||| || |||||  |||||  ||||  ||||||||||||||| || || |||||||||||||||||| ||||    
T  41638401 actttattttatcttgtgttctataaataaattatacataagcacttatatgataagtgcttaatcaagttgtttatccaaacagggcc 41638489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 4549853 - 4549813
Alignment:
Q  178 acaatttcactttattttatcttctgttttagaaatagctt 218  Q
    ||||||| ||||||||||||||| |||| ||||||||||||    
T  4549853 acaatttaactttattttatcttttgttatagaaatagctt 4549813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 24915133 - 24915181
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttatataag 225  Q
    |||||||| |||||||||||||||||| | ||||||||| |||| ||||    
T  24915133 aacaatttaactttattttatcttctgctatagaaatagtttatgtaag 24915181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 34952203 - 34952159
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||| |||||| | |||||||||||||||    
T  34952203 aacaatttaactttattttaacttctgctctagaaatagcttata 34952159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 35666982 - 35667014
Alignment:
Q  236 ataagtgtttgattaagttgtttatccaaacat 268  Q
    |||||||||| ||||||||||||||||||||||    
T  35666982 ataagtgtttaattaagttgtttatccaaacat 35667014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 36151587 - 36151631
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| |||| | |||||||||||||    
T  36151587 aacaatttgactttattttatcttttgttattgaaatagcttata 36151631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 46499936 - 46499980
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| | || |||||||||||||||    
T  46499936 aacaatttgactttattttatcttttcttatagaaatagcttata 46499980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 49517058 - 49517014
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    |||||||| ||||||||||||||| |||| |||||||| ||||||    
T  49517058 aacaatttgactttattttatcttttgttatagaaataacttata 49517014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 50319280 - 50319236
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata 221  Q
    ||||| || ||||||||||||||| |||| |||||||||||||||    
T  50319280 aacaacttgactttattttatcttttgttatagaaatagcttata 50319236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 6719 - 6812
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata--taagtgcttatatgataagtgtttg-attaagttgtttatccaaaca 267  Q
    |||||||| |||| | ||||| || |||| ||||||||| |||||  ||||  ||||||||||||||| ||  |||||||||||||||||||||    
T  6719 aacaatttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgataagtgcttatattaagttgtttatccaaaca 6812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 116638 - 116731
Alignment:
Q  177 aacaatttcactttattttatcttctgttttagaaatagcttata--taagtgcttatatgataagtgtttg-attaagttgtttatccaaaca 267  Q
    |||||||| |||| | ||||| || |||| ||||||||| |||||  ||||  ||||||||||||||| ||  |||||||||||||||||||||    
T  116638 aacaatttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgataagtgcttatattaagttgtttatccaaaca 116731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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