View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6711_high_4 (Length: 482)
Name: NF6711_high_4
Description: NF6711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6711_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 6 - 463
Target Start/End: Complemental strand, 47333662 - 47333205
Alignment:
| Q |
6 |
tggtgccggtgattttgctggaacaggggtaggagctggagtagcctttggtggagaagcacttggagttggagcagaaacaggtgaagcagaagcttta |
105 |
Q |
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| T |
47333662 |
tggtgccggtgattttgctggaacaggggtaggagctggagtagcctttggtggagaagcacttggagttggagcagaaacaggtgaagcagaagcttta |
47333563 |
T |
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| Q |
106 |
acaacattaattgaaagtttttgaccagctgaacaatgacctggaacggcacaaatgaagttctgttgtcctgtttcgttcaaagttaccgtagctggac |
205 |
Q |
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| T |
47333562 |
acaacgttaattgaaagtttttgaccagctgaacaatgacctggaactgcacaaatgaagttctgttgtcctgtttcgttcaaagttacggtagctggac |
47333463 |
T |
|
| Q |
206 |
tgtttgttaaggtgaaaagtgtgtttgctccattgcaactatcgtaagctgtttttgttaccttagccacatcatgttgtccacttgcataattgaacac |
305 |
Q |
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| T |
47333462 |
tgtttgttaaggtgaaaagtgtgtttgctccattgcaactatcgtaagctgtttttgttaccttagccacatcatgttgtccacttgcataattgaacac |
47333363 |
T |
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| Q |
306 |
tgcaaaatcaagtttacgttaaaacaatttttatataaacgaatcaaaacgacaagggcctgaaatatattatttcttacctagagtgtcgcctacggtg |
405 |
Q |
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| T |
47333362 |
tgcaaaatcaagtttaccttaaaacaatttttatataaacgaatcaaaacgacaagggtctgaaatatattatttcttacctagagtgtcgcctacggtg |
47333263 |
T |
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| Q |
406 |
aaggttttgttggaagcccagttggtatagaatgaagcaccgttggttgggatagtcc |
463 |
Q |
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| T |
47333262 |
aaggttttgttggaagcccagttggtatagaatgaagcaccgttggttgggatagtcc |
47333205 |
T |
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