View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6711_high_5 (Length: 468)
Name: NF6711_high_5
Description: NF6711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6711_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 12 - 448
Target Start/End: Original strand, 44699139 - 44699575
Alignment:
| Q |
12 |
agtttggtgttatgaggacttcatacaatacccaaaaggctgaatggactgttgatgagatgattgttatagttatccaagaggaggagtctctcaaaaa |
111 |
Q |
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| T |
44699139 |
agtttgatgttatgaggacttcatacaatacccaaaaggctgaatggactgttgatgagatgattgttatagttatccaagaggaggagtctctcaaaaa |
44699238 |
T |
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| Q |
112 |
ggcgaaatttcagtgttcattttgttgctgcttcttctagcacaaaggatgtcaagagaaactttcataaaggaaaatattattctaatgataagaaaag |
211 |
Q |
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| T |
44699239 |
ggtgaaatttcagtgttcattttgttgctgcttcttctagcacaaaggatgtcaagagaaactttcataaaggaaaatattattctaatgataagaaaag |
44699338 |
T |
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| Q |
212 |
gggaaaggcagtgcaacatacgaagcttaaaaagaaaacatataagggaaacttccataaagatatttgcaagtaatgcactaagtatggctataaggtg |
311 |
Q |
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| T |
44699339 |
gggaaaggcagtgcaacatatgaagcttaaaaagaaaacatataagggaaacttccataaagatatttgcaagtaatgcactaagtatggctataaggtg |
44699438 |
T |
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| Q |
312 |
gttggctgctatttccttacaagggaaacttgagaagcaatgcacactcttagctctagcttgttttgaatctaatatagtagatgtaccttctgatact |
411 |
Q |
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| T |
44699439 |
gttgactgctatttccttacaagggaaacttgagaagcaatgcacactcttagctctagcttgttttgaatctaatatagtagatgtaccttctgatact |
44699538 |
T |
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| Q |
412 |
tggtggttagatccgagtcgaattcacgatatgaatg |
448 |
Q |
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| T |
44699539 |
tggtggttagattcgagtcgaattcacgatatgaatg |
44699575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 422
Target Start/End: Complemental strand, 44699992 - 44699596
Alignment:
| Q |
14 |
tttggtgttatgaggacttcatacaatacccaaaaggctgaatggactgttgatgagatgattgttatagttatccaagaggaggagtctctcaaaaagg |
113 |
Q |
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| T |
44699992 |
tttgatgttacgaggacttcttacaatacctaaaagactgaatgcactattgatgagatgattgctacaattacccatgcggag---tctctcagaaagg |
44699896 |
T |
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| Q |
114 |
cgaaatttca--gtgttcattttgttgctgcttcttctagcacaaaggatgtcaagagaaactttcataaaggaaaatattattctaatgataagaaa-- |
209 |
Q |
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| T |
44699895 |
tgaattcttaaagtgtttagtttgttgcttcttcttctgccacaaaggatgtaatgagaaactttcatgaaggaaaa-ataattatgatgataacaaata |
44699797 |
T |
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| Q |
210 |
-aggggaaaggcagtgcaacatacgaagcttaaaaagaaaacatataagggaaacttccataaagatatttgcaagtaatgcactaagtatggctataag |
308 |
Q |
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| T |
44699796 |
aaagggaaaggcagtgcaacatatggagcctactaaaaaatcacgaaagagaaactgccgtaaagagatttgcaactcctacgagaagtatggc---aag |
44699700 |
T |
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| Q |
309 |
gtggttggctgctatttccttacaagggaaacttgagaagcaatgcacactcttagctctagcttgttttgaatctaatatagtagatgtaccttctgat |
408 |
Q |
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| T |
44699699 |
gtggatgatggctatttcctaaaaagaaaaattt-agaagcaatgcac---------tctagtttgttttgaatctaatattgtatatttaccttctgat |
44699610 |
T |
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