View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6711_high_6 (Length: 445)

Name: NF6711_high_6
Description: NF6711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6711_high_6
NF6711_high_6
[»] chr1 (2 HSPs)
chr1 (45-436)||(41198908-41199309)
chr1 (326-378)||(17251557-17251609)
[»] scaffold0308 (2 HSPs)
scaffold0308 (326-376)||(9241-9291)
scaffold0308 (326-425)||(34-129)
[»] chr6 (4 HSPs)
chr6 (326-376)||(16701858-16701908)
chr6 (142-248)||(16701660-16701765)
chr6 (326-368)||(15714695-15714737)
chr6 (326-376)||(15726892-15726942)
[»] chr2 (2 HSPs)
chr2 (388-436)||(33322653-33322701)
chr2 (278-307)||(15062525-15062554)
[»] scaffold0572 (1 HSPs)
scaffold0572 (326-425)||(3434-3529)
[»] scaffold0086 (1 HSPs)
scaffold0086 (326-376)||(31022-31072)
[»] scaffold0051 (1 HSPs)
scaffold0051 (326-425)||(43021-43116)
[»] scaffold0429 (1 HSPs)
scaffold0429 (326-425)||(6397-6492)
[»] scaffold0177 (1 HSPs)
scaffold0177 (326-376)||(27599-27649)
[»] scaffold0019 (1 HSPs)
scaffold0019 (202-236)||(123833-123867)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 45 - 436
Target Start/End: Complemental strand, 41199309 - 41198908
Alignment:
Q  45 gaatttggcgatgctaagtacttagctgaatgaggattgaggagtatcatatgcnnnnnnnnaggagtatcatatgctcaaaatacaaaatccatgtat- 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||     
T  41199309 gaatttggcgatgctaagtacttagctgaatgaggattgaggagtatcatatgcttttttttaggagtatcatatgctcaaaatacaaaatccatgtatg 41199210  T
Q  144 -----tcctgcattggtaccaacgaaaactttagctcaaattggttcttctcttatggtaaatctctagcaatcatttcat-----gtagaagtttcttt 233  Q
         ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||    
T  41199209 tctattcctgcattggtaccaacggaaattttagctcaaattggttcttctcttatggtaaatctctagcaatcatttcatttcatgtagaagtttcttt 41199110  T
Q  234 gctatagcattctcaaatagagcgtgaataaatgtttgataaaatatagcattaggaatgcaaccattgtcttttannnnnnnnatagcgatttcatcaa 333  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||        ||||||||||||||||    
T  41199109 cctatagcattctcaaatagagcgtgaataaatgtttgataaaatatagcattaggaatgcagccattgtctttta-attttttatagcgatttcatcaa 41199011  T
Q  334 acaagccctctaaacaaagaccgttgatcataatattatatgttaagactattaattacattgaatcctttaatcaaaagatcctgagaaatttgatgtc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41199010 acaagccctctaaacaaagaccgttgatcataatattatatgttcagactattaattacattgaatcctttaatcaaaagatcctgagaaatttgatgtc 41198911  T
Q  434 cat 436  Q
    |||    
T  41198910 cat 41198908  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 17251609 - 17251557
Alignment:
Q  326 ttcatcaaacaagccctctaaacaaagaccgttgatcataatattatatgtta 378  Q
    |||||||||||||| ||||  |||||| || |||||||||||| |||||||||    
T  17251609 ttcatcaaacaagctctctttacaaagcccattgatcataatactatatgtta 17251557  T

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Target: scaffold0308 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 9291 - 9241
Alignment:
Q  326 ttcatcaaacaagccctctaaacaaagaccgttgatcataatattatatgt 376  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  9291 ttcatcaagcaagccctctaaacaaagaccattgatcataatattatatgt 9241  T

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Target: scaffold0308; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 425
Target Start/End: Complemental strand, 129 - 34
Alignment:
Q  326 ttcatcaaacaagccctctaaacaaagaccgttgatcataatattatatgttaagactattaattacattgaatcctttaatcaaaagatcctgagaaat 425  Q
    ||||| || ||| |||||||| |||||||| |||||||||||| |||||||  ||||| ||||    |||| | ||||||||||||||||||||| ||||    
T  129 ttcattaagcaaaccctctaatcaaagacctttgatcataatagtatatgtccagactgttaa----attgtagcctttaatcaaaagatcctgaaaaat 34  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 16701858 - 16701908
Alignment:
Q  326 ttcatcaaacaagccctctaaacaaagaccgttgatcataatattatatgt 376  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  16701858 ttcatcaagcaagccctctaaacaaagaccattgatcataatattatatgt 16701908  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 16701660 - 16701765
Alignment:
Q  142 attcctgcattggtaccaacgaaaactttagctcaaattggttcttctcttatggtaaatctctagcaatcatttcatgtagaagtttctttgctatagc 241  Q
    ||||||| ||||| ||||| | ||||||||||||||||||||| || |||||  ||||| ||||| |||||| |||| ||| |||||||| |||| || |    
T  16701660 attcctgaattggaaccaatggaaactttagctcaaattggtt-ttttcttaaagtaaacctctaacaatcaattcacgtacaagtttctctgctttatc 16701758  T
Q  242 attctca 248  Q
    |||||||    
T  16701759 attctca 16701765  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 15714695 - 15714737
Alignment:
Q  326 ttcatcaaacaagccctctaaacaaagaccgttgatcataata 368  Q
    ||||||||| |||||||||||||||||||| ||||||||||||    
T  15714695 ttcatcaaataagccctctaaacaaagaccattgatcataata 15714737  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 15726892 - 15726942
Alignment:
Q  326 ttcatcaaacaagccctctaaacaaagaccgttgatcataatattatatgt 376  Q
    ||||||||| ||||||| | |||||||||| |||||||||||| |||||||    
T  15726892 ttcatcaaataagccctttgaacaaagaccattgatcataatactatatgt 15726942  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 33322701 - 33322653
Alignment:
Q  388 attacattgaatcctttaatcaaaagatcctgagaaatttgatgtccat 436  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||    
T  33322701 attacattgaatcctttaatcagaagatccttagaaatttgatgtccat 33322653  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 307
Target Start/End: Original strand, 15062525 - 15062554
Alignment:
Q  278 tatagcattaggaatgcaaccattgtcttt 307  Q
    ||||||||||||||||||||||||||||||    
T  15062525 tatagcattaggaatgcaaccattgtcttt 15062554  T

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Target: scaffold0572 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 425
Target Start/End: Complemental strand, 3529 - 3434
Alignment:
Q  326 ttcatcaaacaagccctctaaacaaagaccgttgatcataatattatatgttaagactattaattacattgaatcctttaatcaaaagatcctgagaaat 425  Q
    ||||| || ||| ||||||||||||||||| |||||||||||| |||||||  ||||| ||||    |||| | ||||||||||||||||||||| ||||    
T  3529 ttcattaagcaaaccctctaaacaaagaccattgatcataatagtatatgtccagactgttaa----attgtagcctttaatcaaaagatcctgaaaaat 3434  T

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Target: scaffold0086 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 31022 - 31072
Alignment:
Q  326 ttcatcaaacaagccctctaaacaaagaccgttgatcataatattatatgt 376  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  31022 ttcatcaaataagccctctaaacaaagaccattgataataatattatatgt 31072  T

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Target: scaffold0051 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 425
Target Start/End: Original strand, 43021 - 43116
Alignment:
Q  326 ttcatcaaacaagccctctaaacaaagaccgttgatcataatattatatgttaagactattaattacattgaatcctttaatcaaaagatcctgagaaat 425  Q
    |||||| | ||| ||||||||||||||||| |||||||||||| |||||||  ||||| ||||    |||| | ||||||||||||||||||||| ||||    
T  43021 ttcatcgagcaaaccctctaaacaaagaccattgatcataatagtatatgtccagactgttaa----attgtagcctttaatcaaaagatcctgaaaaat 43116  T

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Target: scaffold0429 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 425
Target Start/End: Complemental strand, 6492 - 6397
Alignment:
Q  326 ttcatcaaacaagccctctaaacaaagaccgttgatcataatattatatgttaagactattaattacattgaatcctttaatcaaaagatcctgagaaat 425  Q
    ||||| || ||| |||||||| |||||||| |||||||||||| |||||||  ||||| ||||    |||| | ||||||||||||||||||||| ||||    
T  6492 ttcattaagcaaaccctctaatcaaagacctttgatcataatagtatatgtccagactgttaa----attgtagcctttaatcaaaagatcctgaaaaat 6397  T

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Target: scaffold0177 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 27649 - 27599
Alignment:
Q  326 ttcatcaaacaagccctctaaacaaagaccgttgatcataatattatatgt 376  Q
    |||||||||||| ||||| ||||||||||| || |||||||||||||||||    
T  27649 ttcatcaaacaatccctccaaacaaagaccattaatcataatattatatgt 27599  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 123833 - 123867
Alignment:
Q  202 ctctagcaatcatttcatgtagaagtttctttgct 236  Q
    |||||||||||||||||||||||||||||| ||||    
T  123833 ctctagcaatcatttcatgtagaagtttctctgct 123867  T

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