View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6711_low_1 (Length: 938)

Name: NF6711_low_1
Description: NF6711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6711_low_1
NF6711_low_1
[»] chr8 (24 HSPs)
chr8 (255-442)||(27056116-27056304)
chr8 (661-920)||(27056562-27056815)
chr8 (475-669)||(27056336-27056532)
chr8 (661-813)||(9642358-9642504)
chr8 (661-757)||(29108829-29108920)
chr8 (602-676)||(15068498-15068572)
chr8 (661-757)||(39445583-39445674)
chr8 (661-753)||(17469249-17469336)
chr8 (661-757)||(27932403-27932494)
chr8 (661-757)||(32303051-32303142)
chr8 (775-813)||(9434978-9435016)
chr8 (606-672)||(9642277-9642343)
chr8 (663-757)||(45236055-45236144)
chr8 (661-757)||(8545356-8545447)
chr8 (661-756)||(20399583-20399673)
chr8 (660-705)||(15068594-15068639)
chr8 (661-712)||(10297488-10297539)
chr8 (661-757)||(24927939-24928030)
chr8 (781-820)||(36274971-36275010)
chr8 (602-672)||(24928057-24928127)
chr8 (719-757)||(30481481-30481519)
chr8 (602-672)||(32303169-32303239)
chr8 (719-756)||(1012610-1012647)
chr8 (607-672)||(9435153-9435218)
[»] chr7 (30 HSPs)
chr7 (661-920)||(5565314-5565568)
chr7 (661-813)||(10995841-10995982)
chr7 (601-672)||(5565216-5565287)
chr7 (784-875)||(27896603-27896694)
chr7 (661-757)||(45380102-45380193)
chr7 (661-757)||(10072461-10072552)
chr7 (663-757)||(33841073-33841162)
chr7 (662-756)||(12980373-12980462)
chr7 (661-757)||(16866164-16866255)
chr7 (661-755)||(18825879-18825968)
chr7 (661-757)||(3226953-3227044)
chr7 (660-712)||(18684009-18684061)
chr7 (661-705)||(27850333-27850377)
chr7 (661-757)||(17885460-17885551)
chr7 (661-712)||(31426043-31426094)
chr7 (661-757)||(39456022-39456112)
chr7 (661-712)||(42908048-42908099)
chr7 (661-757)||(43507440-43507531)
chr7 (775-813)||(8906704-8906742)
chr7 (662-711)||(3157119-3157168)
chr7 (663-738)||(29014961-29015037)
chr7 (661-705)||(41103698-41103742)
chr7 (661-741)||(22973399-22973474)
chr7 (606-668)||(8906503-8906565)
chr7 (602-672)||(17885578-17885648)
chr7 (661-751)||(27896482-27896567)
chr7 (602-672)||(35074583-35074653)
chr7 (603-672)||(10072579-10072648)
chr7 (664-701)||(10990871-10990908)
chr7 (663-712)||(30839143-30839192)
[»] chr4 (29 HSPs)
chr4 (662-914)||(10301923-10302170)
chr4 (603-672)||(10302198-10302267)
chr4 (661-741)||(29527824-29527899)
chr4 (795-851)||(45275362-45275418)
chr4 (661-757)||(5902622-5902713)
chr4 (661-757)||(6382280-6382371)
chr4 (661-757)||(7608966-7609057)
chr4 (661-712)||(43309519-43309570)
chr4 (661-757)||(44317531-44317622)
chr4 (661-756)||(1724318-1724408)
chr4 (775-813)||(3737720-3737758)
chr4 (663-757)||(47550363-47550452)
chr4 (661-705)||(32596192-32596236)
chr4 (661-757)||(11028069-11028160)
chr4 (661-704)||(12825469-12825512)
chr4 (661-757)||(31752452-31752543)
chr4 (661-757)||(48459477-48459568)
chr4 (661-756)||(6482043-6482133)
chr4 (602-676)||(45065359-45065433)
chr4 (600-712)||(31782649-31782768)
chr4 (664-705)||(39375321-39375362)
chr4 (600-672)||(37349226-37349298)
chr4 (601-676)||(1866459-1866534)
chr4 (661-740)||(3737789-3737863)
chr4 (661-757)||(31918566-31918657)
chr4 (661-712)||(41915004-41915055)
chr4 (630-676)||(10574370-10574416)
chr4 (775-813)||(43309426-43309464)
chr4 (602-672)||(43893341-43893411)
[»] chr2 (18 HSPs)
chr2 (775-882)||(10212273-10212380)
chr2 (606-669)||(22900906-22900969)
chr2 (661-813)||(22900729-22900876)
chr2 (661-757)||(15546735-15546826)
chr2 (661-757)||(7314655-7314746)
chr2 (662-757)||(24414140-24414230)
chr2 (602-667)||(10212520-10212585)
chr2 (661-705)||(37106730-37106774)
chr2 (601-672)||(30847055-30847126)
chr2 (606-672)||(15546853-15546919)
chr2 (663-741)||(38342528-38342601)
chr2 (780-813)||(15546676-15546709)
chr2 (664-705)||(37472769-37472810)
chr2 (602-663)||(39256370-39256431)
chr2 (663-712)||(43371584-43371633)
chr2 (661-741)||(14331534-14331609)
chr2 (602-672)||(6027811-6027881)
chr2 (602-676)||(26755845-26755919)
[»] chr1 (27 HSPs)
chr1 (775-897)||(38686514-38686641)
chr1 (663-813)||(10778576-10778721)
chr1 (661-757)||(29936407-29936498)
chr1 (661-811)||(34085170-34085317)
chr1 (661-757)||(18354087-18354178)
chr1 (661-705)||(5181077-5181121)
chr1 (661-757)||(17134938-17135029)
chr1 (601-676)||(19003575-19003650)
chr1 (661-757)||(19572519-19572610)
chr1 (661-757)||(36187227-36187318)
chr1 (663-757)||(28297925-28298014)
chr1 (660-712)||(19003672-19003724)
chr1 (662-705)||(3627993-3628036)
chr1 (661-712)||(16237311-16237362)
chr1 (661-757)||(51421849-51421940)
chr1 (602-672)||(20774675-20774745)
chr1 (602-668)||(38686763-38686829)
chr1 (652-702)||(44632139-44632189)
chr1 (661-705)||(24710885-24710929)
chr1 (629-676)||(10450014-10450061)
chr1 (719-757)||(13390404-13390442)
chr1 (719-757)||(23966864-23966902)
chr1 (602-672)||(29936531-29936601)
chr1 (661-711)||(33293538-33293588)
chr1 (663-705)||(42707846-42707888)
chr1 (661-702)||(16408983-16409024)
chr1 (663-704)||(16433176-16433217)
[»] chr3 (19 HSPs)
chr3 (778-882)||(10043401-10043505)
chr3 (661-813)||(30616288-30616437)
chr3 (661-757)||(23546949-23547040)
chr3 (661-757)||(44172616-44172707)
chr3 (661-757)||(44179316-44179407)
chr3 (662-757)||(39728661-39728751)
chr3 (661-705)||(48390824-48390868)
chr3 (661-744)||(10043289-10043367)
chr3 (601-672)||(39655182-39655253)
chr3 (602-672)||(7469688-7469758)
chr3 (719-757)||(34154404-34154442)
chr3 (661-705)||(44953442-44953486)
chr3 (601-676)||(1772308-1772383)
chr3 (605-668)||(10043195-10043258)
chr3 (661-757)||(34025944-34026035)
chr3 (661-757)||(39655280-39655371)
chr3 (661-757)||(49580054-49580145)
chr3 (720-757)||(22535902-22535939)
chr3 (661-702)||(49025720-49025761)
[»] scaffold0036 (1 HSPs)
scaffold0036 (661-756)||(33384-33474)
[»] chr6 (20 HSPs)
chr6 (661-757)||(5863390-5863481)
chr6 (661-757)||(27738762-27738853)
chr6 (661-757)||(32532530-32532621)
chr6 (661-757)||(32853834-32853925)
chr6 (661-756)||(2367317-2367407)
chr6 (661-757)||(3483930-3484021)
chr6 (602-672)||(3483833-3483903)
chr6 (663-750)||(14410864-14410946)
chr6 (603-672)||(10187991-10188060)
chr6 (661-702)||(18908933-18908974)
chr6 (664-746)||(29199895-29199972)
chr6 (665-705)||(20610993-20611033)
chr6 (661-741)||(28079703-28079778)
chr6 (661-705)||(30986290-30986334)
chr6 (661-757)||(12141375-12141466)
chr6 (664-711)||(20349095-20349142)
chr6 (601-672)||(30986361-30986432)
chr6 (602-672)||(31496542-31496612)
chr6 (602-672)||(31501928-31501998)
chr6 (661-702)||(14506126-14506167)
[»] chr5 (21 HSPs)
chr5 (661-757)||(4583109-4583200)
chr5 (661-757)||(4920816-4920907)
chr5 (600-671)||(10822447-10822518)
chr5 (661-740)||(10822534-10822608)
chr5 (661-757)||(15890197-15890287)
chr5 (661-757)||(17853301-17853391)
chr5 (602-676)||(2681320-2681394)
chr5 (775-813)||(10822647-10822685)
chr5 (663-757)||(12866561-12866650)
chr5 (662-739)||(23045000-23045072)
chr5 (664-741)||(28569032-28569104)
chr5 (665-757)||(22694913-22695000)
chr5 (719-757)||(1218745-1218783)
chr5 (602-668)||(4920938-4921004)
chr5 (719-757)||(10127071-10127109)
chr5 (719-757)||(12834635-12834673)
chr5 (598-676)||(23044898-23044976)
chr5 (633-702)||(27302714-27302784)
chr5 (602-672)||(33727912-33727982)
chr5 (664-705)||(33728012-33728053)
chr5 (661-702)||(38006477-38006518)
[»] scaffold0008 (2 HSPs)
scaffold0008 (602-676)||(67853-67927)
scaffold0008 (602-676)||(75696-75770)
[»] scaffold0244 (1 HSPs)
scaffold0244 (662-711)||(4589-4638)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 4e-90; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 255 - 442
Target Start/End: Original strand, 27056116 - 27056304
Alignment:
Q  255 gcctcaacatgtcggatacc-tttgtagcgtttgtcaatttccactctctaaatttgttgtctctcccaatcttgccaagctcgaccaacatttggcctc 353  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27056116 gcctcaacatgtcggataccctttgtagcgtttgtcaatttccactctctaaatttgttgtctctcccaatcttgccaagcttgaccaacatttggcctc 27056215  T
Q  354 atgcaaagcattaattacaattgattagaagatctggagatgcattttacttttatttgttgatgttttcaagatctagaaaataaatc 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  27056216 atgcaaagcattaattacaattgattagaagatctggagatgcattttacttttatttgttgatgttttcgagatccagaaaataaatc 27056304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 661 - 920
Target Start/End: Original strand, 27056562 - 27056815
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 760  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||     |||||||||||||||||| ||||||||||||||||||       
T  27056562 gggtttttcccgatttcaaagtacaggtatgggacgggtaacggggttatatcta-----cccaccccgaacccatacacatactcgtcccaaatgtaaa 27056656  T
Q  761 nnnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggtacttttc 860  Q
        |||       ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  27056657 aaa-ttacttttttacccccttttatataaatagaaacacaacgctagatcatttcactccagtccaaaaggcagatgtcattgtcagacgacacttttc 27056755  T
Q  861 tggattctctctcaagcagtcaacgctgctcacaaagctggtaattcaatattggttttc 920  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27056756 tggattctctctcaagcagtcaacgctgctcacaaagctggtaattcaatattggttttc 27056815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 475 - 669
Target Start/End: Original strand, 27056336 - 27056532
Alignment:
Q  475 tactaagaacttcattatattctctgaattaatnnnnnnnn--gtttgcgacctaaaatgggcaaaccgagccaaccaaactgaacaatttgccgaaccg 572  Q
    |||||||||||||||||||||||||||||||||          |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  27056336 tactaagaacttcattatattctctgaattaataaaaaaaaaagtttgcgaccaaaaatgggcaaaccgagccaaccaaactgaacaatttgctgaaccg 27056435  T
Q  573 gaaagctgtaatccgttcaaaccgattcttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttcc 669  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | ||||||||||||||||    
T  27056436 gaaagctgtaatccgttcaaaccgattcttaggcatggcaacaatacccgtcctcgtgggtatccgcccatactcatctcgatttgacgggttttcc 27056532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 661 - 813
Target Start/End: Original strand, 9642358 - 9642504
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 760  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||     || || ||| ||||||||||||| ||||| ||||||||||||       
T  9642358 gggttttccccgatttcaaaacacgggtatgggacgggtaacggggttat-----atatatccatcccgaacccatactcatacccgtcccaaatgt-aa 9642451  T
Q  761 nnnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcat 813  Q
        |||       |||||||||||||||||||||||||||||||||||||||    
T  9642452 aaaattatttttttacccctttttatataaatagaaacacaaccctagatcat 9642504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 29108829 - 29108920
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||| |||||||| |||  | |||||||||||||||||||||  |||||   || |||||||||||||||||||||||||| ||||||||||||    
T  29108829 gggtttttcccgattttaaaacatgggtatgggacgggtaacggg--tatat---atgtacccaccccgaacccatacccatacccgtcccaaatgt 29108920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 602 - 676
Target Start/End: Original strand, 15068498 - 15068572
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 676  Q
    ||||||||||||||| |||||| | | |||||||||||||| ||| | ||| |||||||||||||||||||||||    
T  15068498 taggcatggcaacaaaacccgtgcccatgggtacccgcccaaaccaaccccgatttgacgggttttccccgattt 15068572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 39445583 - 39445674
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||| ||||||||||||  ||||||||||||| ||||||||| ||||     |  |||||||||||||| ||||||||||| ||||||||||||    
T  39445583 gggtttttcccgatttcaaaacacgggtatgggacaggtaacgggtttat-----aggtacccaccccgaactcatacccatacccgtcccaaatgt 39445674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 753
Target Start/End: Complemental strand, 17469336 - 17469249
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaa 753  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||||   |  |||||||||| |||||||||||| || ||||||||    
T  17469336 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccaaacccatacccaaacccgtcccaa 17469249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 27932494 - 27932403
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||  |||||   |  |||||||||||||||||||| ||||  ||||||||||||    
T  27932494 gggttttccccgatttcaaaacacgggtatgggacgagtaacggg--tatat---aggtacccaccccgaacccatactcatatccgtcccaaatgt 27932403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 32303142 - 32303051
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  32303142 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 32303051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 775 - 813
Target Start/End: Complemental strand, 9435016 - 9434978
Alignment:
Q  775 acccctttttatataaatagaaacacaaccctagatcat 813  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9435016 acccctttttatataaatagaaacacaaccctagatcat 9434978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 606 - 672
Target Start/End: Original strand, 9642277 - 9642343
Alignment:
Q  606 catggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    |||||||||||||| ||||| | |||||||||| ||| |||||||||  ||||||||||||||||||    
T  9642277 catggcaacaatactcgtccccatgggtacccgtccagacccatcccggtttgacgggttttccccg 9642343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 663 - 757
Target Start/End: Complemental strand, 45236144 - 45236055
Alignment:
Q  663 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||| |||||||||  ||||||||||||||||||| |||  |||||   |  ||||||||||||||||||| |||||| ||||||||||||    
T  45236144 gttttccctgatttcaaaacacgggtatgggacgggtaatggg--tatat---aggtacccaccccgaacccatatccatacccgtcccaaatgt 45236055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 8545356 - 8545447
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||| |||||||||||  |||||||||| ||| ||||||||| ||||  ||     |||||||||||||||||| || |||||||||||||||    
T  8545356 gggttttctccgatttcaaaacacgggtatggaacgagtaacggggatatagata-----cccaccccgaacccatactcaaactcgtcccaaatgt 8545447  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 661 - 756
Target Start/End: Complemental strand, 20399673 - 20399583
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 756  Q
    |||||||| |||||||||||  |||||||||||||||||||||||  |||||   |  |||||||||||||||||| |||| || |||||| ||||    
T  20399673 gggttttctccgatttcaaaacacgggtatgggacgggtaacggg--tatat---agatacccaccccgaacccattcccaaacccgtcccgaatg 20399583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 705
Target Start/End: Original strand, 15068594 - 15068639
Alignment:
Q  660 cgggttttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    ||||||||||||||||||||| |||||||| ||||| |||||||||    
T  15068594 cgggttttccccgatttcaaaatacgggtacgggacaggtaacggg 15068639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 712
Target Start/End: Complemental strand, 10297539 - 10297488
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 712  Q
    |||||||||||||||||||| |||||| | ||||| |||||||||| |||||    
T  10297539 gggttttccccgatttcaaaatacggggacgggacaggtaacggggatatat 10297488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 24928030 - 24927939
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||| ||| || ||  ||||||||| |||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  24928030 gggttttccctgatctcgaaacacgggtatgagacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 24927939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 781 - 820
Target Start/End: Complemental strand, 36275010 - 36274971
Alignment:
Q  781 ttttatataaatagaaacacaaccctagatcatttcactc 820  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  36275010 ttttatataaatagaaacccaaccctaaatcatttcactc 36274971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 672
Target Start/End: Complemental strand, 24928127 - 24928057
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    ||||||||||||||| |||| | | || || |||||||||  ||| | |||||||||||||||||||||||    
T  24928127 taggcatggcaacaaaacccatacccgcggttacccgcccgaaccaaacccaatttgacgggttttccccg 24928057  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 719 - 757
Target Start/End: Original strand, 30481481 - 30481519
Alignment:
Q  719 tacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  30481481 tacccaccccgaacccatacccaaactcgtcccgaatgt 30481519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 672
Target Start/End: Complemental strand, 32303239 - 32303169
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    ||||||||||||||| |||| | | ||||| |||||||||  | | | |||||||||||||||||||||||    
T  32303239 taggcatggcaacaaaacccatacccgtggttacccgcccgaaacaaacccaatttgacgggttttccccg 32303169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 756
Target Start/End: Complemental strand, 1012647 - 1012610
Alignment:
Q  719 tacccaccccgaacccatacccatactcgtcccaaatg 756  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  1012647 tacccaccccgaacccatacccaaactcgtcccgaatg 1012610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 672
Target Start/End: Complemental strand, 9435218 - 9435153
Alignment:
Q  607 atggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    ||||||||||||||||| | | |||||| ||||||| | ||| ||| ||||||||||| |||||||    
T  9435218 atggcaacaatacccgttcccatgggtatccgcccaaatccaccccgatttgacgggtattccccg 9435153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 3e-81; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 661 - 920
Target Start/End: Original strand, 5565314 - 5565568
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 760  Q
    |||||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||     |||||||| ||||||||||||||| | ||||||||||       
T  5565314 gggttttccctgatttcaaagtacggatatgggatgggtaacggggttatatgta-----cccacccctaacccatacccatacacatcccaaatgtaaa 5565408  T
Q  761 nnnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggtacttttc 860  Q
        |         ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5565409 aaattactttttttacccccttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggcacttttc 5565508  T
Q  861 tggattctctctcaagcagtcaacgctgctcacaaagctggtaattcaatattggttttc 920  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5565509 tggattctctctcaagcagtcaacgctgctcacaaagctggtaattcaatattggttttc 5565568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 661 - 813
Target Start/End: Original strand, 10995841 - 10995982
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 760  Q
    |||||||||||||||||||   |||||||||||||||||||| |||||||     || |||||||||||||||||||||||||| ||| ||||||||       
T  10995841 gggttttccccgatttcaagacacgggtatgggacgggtaacagggttat-----atatacccaccccgaacccatacccatacccgttccaaatgtaat 10995935  T
Q  761 nnnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcat 813  Q
        ||        ||||||||||||||||||||||||||||||||| |||||    
T  10995936 tttttt------ttacccctttttatataaatagaaacacaaccctatatcat 10995982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 601 - 672
Target Start/End: Original strand, 5565216 - 5565287
Alignment:
Q  601 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    ||||||||| ||||||||||||||| | |||||||||||||||||||| ||| ||||||||| |||||||||    
T  5565216 ttaggcatgacaacaatacccgtccccatgggtacccgcccatacccaccccgatttgacggattttccccg 5565287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 784 - 875
Target Start/End: Original strand, 27896603 - 27896694
Alignment:
Q  784 tatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggtacttttctggattctctctcaa 875  Q
    |||||||||| |||||||| |||||||||||||||||| ||||||| | || ||||||||||||||||  |||||  ||| |||||||||||    
T  27896603 tatataaatacaaacacaatcctagatcatttcactccggtccaaacgacaaatgtcattgtcagacgacactttcatgggttctctctcaa 27896694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 45380193 - 45380102
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||  |||||   |  ||||||||||||||||||||| | |||||||||||||||    
T  45380193 gggtttttcccgatttcaaaatacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacctaaactcgtcccaaatgt 45380102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 10072552 - 10072461
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||  |||||   |  |||||||||||||||||||||||||  ||||||||||||    
T  10072552 gggttttccccgatttcaaaacacgggtatggaacgggtaacggg--tatat---aggtacccaccccgaacccatacccataaccgtcccaaatgt 10072461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 663 - 757
Target Start/End: Complemental strand, 33841162 - 33841073
Alignment:
Q  663 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||  ||||||||||||||||||||  ||||||     || ||| |||||||||||||||| ||||| ||||||||||||    
T  33841162 gttttccccgatttcaaaacacgggtatgggacgggtaacatggttat-----atgtactcaccccgaacccatactcatacccgtcccaaatgt 33841073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 662 - 756
Target Start/End: Complemental strand, 12980462 - 12980373
Alignment:
Q  662 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 756  Q
    |||||||||||||||||||  ||||||||||||||||||| |||  |||||   |  ||||||||||||||||||||||| || |||||||||||    
T  12980462 ggttttccccgatttcaaaacacgggtatgggacgggtaatggg--tatat---aagtacccaccccgaacccatacccaaacccgtcccaaatg 12980373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 16866255 - 16866164
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| |||||  |||||||||||||| ||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  16866255 gggttttccccgatctcaaaacacgggtatgggacgagtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 16866164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 661 - 755
Target Start/End: Original strand, 18825879 - 18825968
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaat 755  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||||   |  |||||||||||||||| |||||| || | ||||||||    
T  18825879 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccgtacccaaacccatcccaaat 18825968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 3226953 - 3227044
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  |||||||||||||||||||| ||  |||     |  |||||||||||||||||||| ||||| | ||||||||||    
T  3226953 gggttttccccgatttcaaaacacgggtatgggacgggtaacaggaatat-----aggtacccaccccgaacccatactcatacacatcccaaatgt 3227044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 660 - 712
Target Start/End: Complemental strand, 18684061 - 18684009
Alignment:
Q  660 cgggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 712  Q
    ||||||||||||||||||||| |||||||| |||||||||||| ||| |||||    
T  18684061 cgggttttccccgatttcaaaatacgggtacgggacgggtaacagggatatat 18684009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 661 - 705
Target Start/End: Original strand, 27850333 - 27850377
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  27850333 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg 27850377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 17885551 - 17885460
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||||| |||  | |||||||||||||||||||||  |||||   |  | || ||||||||||||||||||||| ||||||||||||    
T  17885551 gggttttccccgattttaaaacatgggtatgggacgggtaacggg--tatat---aggttccaaccccgaacccatacccatacccgtcccaaatgt 17885460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 661 - 712
Target Start/End: Complemental strand, 31426094 - 31426043
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 712  Q
    |||||||||||||||| ||| |||||||||| |||||||||||||| |||||    
T  31426094 gggttttccccgatttaaaaatacgggtatgagacgggtaacggggatatat 31426043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 39456022 - 39456112
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  | |||||||||||||||||||||  |||||   |  ||||||||||||| |||||| ||||| ||||||||||||    
T  39456022 gggttttccccgatttcaaaacatgggtatgggacgggtaacggg--tatat---aggtacccaccccgaa-ccatactcatacccgtcccaaatgt 39456112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 661 - 712
Target Start/End: Original strand, 42908048 - 42908099
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 712  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||| |||||    
T  42908048 gggttttccccgatttcaaaatacgggtacgggacgggtaatggggatatat 42908099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 43507531 - 43507440
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  | ||||||| |||||||||||||    ||| ||  | |||||||| ||||||||||| |||||||||||||||||    
T  43507531 gggttttccccgatttcaaaacatgggtatgagacgggtaacggg----tatataggc-acccaccctgaacccatacctatactcgtcccaaatgt 43507440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 775 - 813
Target Start/End: Original strand, 8906704 - 8906742
Alignment:
Q  775 acccctttttatataaatagaaacacaaccctagatcat 813  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  8906704 acccctttttatataaatagaaacacaaccttagatcat 8906742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 711
Target Start/End: Complemental strand, 3157168 - 3157119
Alignment:
Q  662 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttata 711  Q
    ||||||||||||||||||| || ||||||||||||| |||||||| ||||    
T  3157168 ggttttccccgatttcaaaatatgggtatgggacggataacggggatata 3157119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 663 - 738
Target Start/End: Original strand, 29014961 - 29015037
Alignment:
Q  663 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatcta-atctacccaccccgaacccatac 738  Q
    ||||| |||||||||||| |||||||| ||||||| || ||||| ||||| || || || |||||||||||||||||    
T  29014961 gtttttcccgatttcaaaatacgggtacgggacggatagcggggatatatatatatatatccaccccgaacccatac 29015037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 661 - 705
Target Start/End: Complemental strand, 41103742 - 41103698
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||    
T  41103742 gggttttccccgatttcaaaacacgggtatgggacggttaacggg 41103698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 741
Target Start/End: Complemental strand, 22973474 - 22973399
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 741  Q
    ||||||||| |||||||||| |||||||| ||||||||||| ||||  |||||   | |||||||| ||||||||||||||    
T  22973474 gggttttccacgatttcaaaatacgggtacgggacgggtaatgggg--atatc---tgtacccacctcgaacccataccca 22973399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 606 - 668
Target Start/End: Original strand, 8906503 - 8906565
Alignment:
Q  606 catggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttc 668  Q
    ||||||||||||||||||   | |||||||||||||| |||||  || |||||||||||||||    
T  8906503 catggcaacaatacccgtttccatgggtacccgcccaaacccactccgatttgacgggttttc 8906565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 672
Target Start/End: Complemental strand, 17885648 - 17885578
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    ||||||||||||||| |||| | | ||||| |||| ||||  ||| | |||||||||||||||||||||||    
T  17885648 taggcatggcaacaaaacccatacccgtggttacctgcccgaaccaaacccaatttgacgggttttccccg 17885578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 661 - 751
Target Start/End: Original strand, 27896482 - 27896567
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtccc 751  Q
    ||||||||||  ||||||||  | ||||||||||||||||||||||||||     ||  ||| ||||||||| ||||||||||| ||||||    
T  27896482 gggttttcccttatttcaaaacatgggtatgggacgggtaacggggttat-----atgcaccaaccccgaactcatacccatacccgtccc 27896567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 672
Target Start/End: Complemental strand, 35074653 - 35074583
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    ||||||||||||||| |||| | | ||||| |||||||||  ||| | ||||||| |||||||||||||||    
T  35074653 taggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaattagacgggttttccccg 35074583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 672
Target Start/End: Complemental strand, 10072648 - 10072579
Alignment:
Q  603 aggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    |||||||||||||| |||| | | || || |||||||||  ||| | |||||||||||||||||||||||    
T  10072648 aggcatggcaacaaaacccatacccgcggttacccgcccgaaccaaacccaatttgacgggttttccccg 10072579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 701
Target Start/End: Original strand, 10990871 - 10990908
Alignment:
Q  664 ttttccccgatttcaaagtacgggtatgggacgggtaa 701  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  10990871 ttttccccgatttcaaaatacgggtacgggacgggtaa 10990908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 712
Target Start/End: Original strand, 30839143 - 30839192
Alignment:
Q  663 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 712  Q
    |||||||| ||||||||| ||||||||||||||| |||||| || |||||    
T  30839143 gttttccctgatttcaaaatacgggtatgggacgagtaacgtggatatat 30839192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 3e-72; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 662 - 914
Target Start/End: Complemental strand, 10302170 - 10301923
Alignment:
Q  662 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnnn 761  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||     |||||||||||||||||||||||  ||||||||||||        
T  10302170 ggttttccccgatttcaaagtacgggtatgagacgggtaacggggttatatgta-----cccaccccgaacccatacccatatccgtcccaaatgtaaaa 10302076  T
Q  762 nnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgt-cattgtcagacggtacttttc 860  Q
       |||       ||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| |||||||    
T  10302075 aa-ttacttttttaccaccttttatataaatagaaacacaaccctagatcatttcactccggtccaaaagggagatgttcattgtcagacggcacttttc 10301977  T
Q  861 tggattctctctcaagcagtcaacgctgctcacaaagctggtaattcaatattg 914  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10301976 tggattctctctcaagcagttaacgctgctcacaaagctggtaattcaatattg 10301923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 603 - 672
Target Start/End: Complemental strand, 10302267 - 10302198
Alignment:
Q  603 aggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||  || |||||| ||||||||||||    
T  10302267 aggcatggcaacaatacccgttcccgtgggtacccgcccatacccactccgatttgatgggttttccccg 10302198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 661 - 741
Target Start/End: Complemental strand, 29527899 - 29527824
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 741  Q
    |||||||||||||||||||| |||||||| | |||||||||||||| |||     || |||||||||||||||||||||||    
T  29527899 gggttttccccgatttcaaaatacgggtacgtgacgggtaacggggatat-----atgtacccaccccgaacccataccca 29527824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 795 - 851
Target Start/End: Complemental strand, 45275418 - 45275362
Alignment:
Q  795 aaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacg 851  Q
    ||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||    
T  45275418 aaacacaaccctagatcatttcactccggtccaaacgacaaatgtcattgtcagacg 45275362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 5902622 - 5902713
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  5902622 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 5902713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 6382280 - 6382371
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||| ||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  6382280 gggttttctccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 6382371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 7609057 - 7608966
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  7609057 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 7608966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 712
Target Start/End: Complemental strand, 43309570 - 43309519
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 712  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  43309570 gggtttttcccgatttcaaaacacgggtatgggacgggtaacggggttatat 43309519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 44317622 - 44317531
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  44317622 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 44317531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 661 - 756
Target Start/End: Original strand, 1724318 - 1724408
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 756  Q
    ||||||||||||||||||||  | ||||||||||||||||||  ||||||||   |  ||||||||||||||||||||||| || |||||| ||||    
T  1724318 gggttttccccgatttcaaaacatgggtatgggacgggtaac--ggttatat---aggtacccaccccgaacccatacccaaacccgtcccgaatg 1724408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 775 - 813
Target Start/End: Complemental strand, 3737758 - 3737720
Alignment:
Q  775 acccctttttatataaatagaaacacaaccctagatcat 813  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3737758 acccctttttatataaatagaaacacaaccctagatcat 3737720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 663 - 757
Target Start/End: Original strand, 47550363 - 47550452
Alignment:
Q  663 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||| |||||  |||||||||||||||||||| ||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  47550363 gttttccccgatctcaaaacacgggtatgggacgggtaacagg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 47550452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 661 - 705
Target Start/End: Original strand, 32596192 - 32596236
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  32596192 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg 32596236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 11028160 - 11028069
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  |||||||||||||| |||||||| ||  |||||||||||    
T  11028160 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaactcatacccaaacctgtcccaaatgt 11028069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 661 - 704
Target Start/End: Original strand, 12825469 - 12825512
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacgg 704  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  12825469 gggttttccccgatttcaaaacacgggtatgggacgggtaacgg 12825512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 31752543 - 31752452
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  ||||||||| |||| |||||| |  |||||   |  | |||||||||||||||||||||||| ||||||||||||    
T  31752543 gggttttccccgatttcaaaacacgggtatgagacgagtaacgag--tatat---aggttcccaccccgaacccatacccatacccgtcccaaatgt 31752452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 48459568 - 48459477
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  | |||||||| ||||||||| ||  |||||   |  |||||||||||||||||||||||||| | ||||||||||    
T  48459568 gggttttccccgatttcaaaacatgggtatggaacgggtaacagg--tatat---aggtacccaccccgaacccatacccatacccatcccaaatgt 48459477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 661 - 756
Target Start/End: Original strand, 6482043 - 6482133
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 756  Q
    ||||||||||| |||| |||  |||||||||||||| |||| |||  |||||   || ||||||||||||||||||||||| || |||||||||||    
T  6482043 gggttttccccaatttaaaaacacgggtatgggacgagtaaaggg--tatat---atgtacccaccccgaacccatacccaaacccgtcccaaatg 6482133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 676
Target Start/End: Complemental strand, 45065433 - 45065359
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 676  Q
    ||||||||||||||| |||||| | | |||||||||||||| ||| | ||| |||||||| ||||||||| ||||    
T  45065433 taggcatggcaacaaaacccgtgcccatgggtacccgcccaaaccaaccccgatttgacgagttttccccaattt 45065359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 600 - 712
Target Start/End: Complemental strand, 31782768 - 31782649
Alignment:
Q  600 cttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgac-------gggttttccccgatttcaaagtacgggtatgg 692  Q
    ||||||||||||||||| | |||| | | |||||||||||||| ||| | | | |||||||       |||||||||||||||||||| |||||||| ||    
T  31782768 cttaggcatggcaacaaaatccgtgcccatgggtacccgcccaaaccaacctcgatttgactgggtttgggttttccccgatttcaaaatacgggtacgg 31782669  T
Q  693 gacgggtaacggggttatat 712  Q
     || |||||||||| |||||    
T  31782668 tacaggtaacggggatatat 31782649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 664 - 705
Target Start/End: Complemental strand, 39375362 - 39375321
Alignment:
Q  664 ttttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  39375362 ttttccccgatttcaaaatacgggtataggacgggtaacggg 39375321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 600 - 672
Target Start/End: Complemental strand, 37349298 - 37349226
Alignment:
Q  600 cttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    ||||||||||||||||| |||| | | ||||| |||||||||  ||| | ||||||||||| |||||||||||    
T  37349298 cttaggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacaggttttccccg 37349226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 676
Target Start/End: Original strand, 1866459 - 1866534
Alignment:
Q  601 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 676  Q
    ||||||| | |||||| |||||| | ||||||||| |||||| ||| | ||| ||||||||| |||||||||||||    
T  1866459 ttaggcaagacaacaaaacccgtgcacgtgggtactcgcccaaaccaaccccgatttgacggattttccccgattt 1866534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 740
Target Start/End: Complemental strand, 3737863 - 3737789
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccc 740  Q
    ||||||| ||| ||||||||  ||||||||||||||||||||| ||||||     || |||||| |||||||||||||||    
T  3737863 gggtttttcccaatttcaaaacacgggtatgggacgggtaacgaggttat-----atgtacccatcccgaacccataccc 3737789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 31918566 - 31918657
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| || ||  |||||||||||||| |||| |||    ||| || | ||||||||||||||||||||||| || ||||||||||||    
T  31918566 gggttttccccgatctcgaaacacgggtatgggacgagtaatggg----tatatagt-tacccaccccgaacccatacccaaacccgtcccaaatgt 31918657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 712
Target Start/End: Original strand, 41915004 - 41915055
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 712  Q
    |||||||||||||||||||| || ||||| |||| ||||||||||| |||||    
T  41915004 gggttttccccgatttcaaaatatgggtacgggaagggtaacggggatatat 41915055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 630 - 676
Target Start/End: Original strand, 10574370 - 10574416
Alignment:
Q  630 gggtacccgcccatacccatcccaatttgacgggttttccccgattt 676  Q
    ||||||||||||| | | ||||| |||||||||||||||||||||||    
T  10574370 gggtacccgcccaaatcaatcccgatttgacgggttttccccgattt 10574416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 775 - 813
Target Start/End: Complemental strand, 43309464 - 43309426
Alignment:
Q  775 acccctttttatataaatagaaacacaaccctagatcat 813  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  43309464 acccatttttatataaatagaaacacaacccaagatcat 43309426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 672
Target Start/End: Complemental strand, 43893411 - 43893341
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    ||||||||||||||| |||| | | ||||| |||||||||   || | |||||||||||||||||||||||    
T  43893411 taggcatggcaacaaaacccatacccgtggttacccgcccgagccaaacccaatttgacgggttttccccg 43893341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 775 - 882
Target Start/End: Complemental strand, 10212380 - 10212273
Alignment:
Q  775 acccctttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggtacttttctggattctctctca 874  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||  | |||||||||||||| |||  | ||| |||| ||||||||||    
T  10212380 acccctttttatataaatacaaacacaaccctatatcatttcactctagtccaaacagaagatgtcattgtcacacgacattttgctgggttctctctca 10212281  T
Q  875 agcagtca 882  Q
    ||||||||    
T  10212280 agcagtca 10212273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 606 - 669
Target Start/End: Complemental strand, 22900969 - 22900906
Alignment:
Q  606 catggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttcc 669  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||    
T  22900969 catggcaacaatacccgtcctcatgggtacccgccctaacccatcccgatttgacgggttttcc 22900906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 661 - 813
Target Start/End: Complemental strand, 22900876 - 22900729
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 760  Q
    ||||||| ||||||||||||  |||||||||||||| |||||||||||||     || |||||||||||||| ||||||||||| ||||||||| ||       
T  22900876 gggtttttcccgatttcaaaacacgggtatgggacgagtaacggggttat-----atatacccaccccgaactcatacccatacccgtcccaaacgtaaa 22900782  T
Q  761 nnnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcat 813  Q
        |         ||||||||||| |||||||||||||||||||||||||||    
T  22900781 aaattattttttttacccctttttacataaatagaaacacaaccctagatcat 22900729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 15546826 - 15546735
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  ||||||||||||||||||||  ||||||     || ||||||||| |||||||||||||||| | ||||||||||    
T  15546826 gggttttccccgatttcaaaacacgggtatgggacgggtaacatggttat-----atatacccaccctgaacccatacccatacccttcccaaatgt 15546735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 7314655 - 7314746
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||||| ||| |||| |||||||||||||||||||  |||||   |  | ||||||||||||||||||||| || ||||||||||||    
T  7314655 gggttttccccgattttaaaatacgagtatgggacgggtaacggg--tatat---aggttcccaccccgaacccatacccacacccgtcccaaatgt 7314746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 662 - 757
Target Start/End: Original strand, 24414140 - 24414230
Alignment:
Q  662 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||| |||||  |||||||||||||||||||| ||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  24414140 ggttttccccgatctcaaaacacgggtatgggacgggtaacagg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 24414230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 602 - 667
Target Start/End: Complemental strand, 10212585 - 10212520
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggtttt 667  Q
    |||||||| ||||||||||||| |  ||||||||||||||||||||| ||| |||||||| |||||    
T  10212585 taggcatgacaacaatacccgtacctgtgggtacccgcccatacccaccccgatttgacgagtttt 10212520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 661 - 705
Target Start/End: Complemental strand, 37106774 - 37106730
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  37106774 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg 37106730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 601 - 672
Target Start/End: Complemental strand, 30847126 - 30847055
Alignment:
Q  601 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    |||||||||||||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||||||    
T  30847126 ttaggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttccccg 30847055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 606 - 672
Target Start/End: Complemental strand, 15546919 - 15546853
Alignment:
Q  606 catggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    |||||||||||||||| ||| | |||||||||||||| || || ||| |||||||| ||||||||||    
T  15546919 catggcaacaatacccatccccatgggtacccgcccaaactcacccccatttgacgagttttccccg 15546853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 741
Target Start/End: Original strand, 38342528 - 38342601
Alignment:
Q  663 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 741  Q
    |||||||||||||| ||| ||||| || |||||||||||||||| |||     || |||||||||||||||||||||||    
T  38342528 gttttccccgattttaaaatacggatacgggacgggtaacggggatat-----atgtacccaccccgaacccataccca 38342601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 780 - 813
Target Start/End: Complemental strand, 15546709 - 15546676
Alignment:
Q  780 tttttatataaatagaaacacaaccctagatcat 813  Q
    ||||||||||||||||||||||||||||||||||    
T  15546709 tttttatataaatagaaacacaaccctagatcat 15546676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 664 - 705
Target Start/End: Original strand, 37472769 - 37472810
Alignment:
Q  664 ttttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  37472769 ttttccccgatttcaaaacacgggtatgggacgggtaacggg 37472810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 602 - 663
Target Start/End: Original strand, 39256370 - 39256431
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacggg 663  Q
    ||||||||||||||| |||||| | | |||||||||||||| ||| | ||||||||||||||    
T  39256370 taggcatggcaacaaaacccgtgcccatgggtacccgcccaaaccaaccccaatttgacggg 39256431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 663 - 712
Target Start/End: Complemental strand, 43371633 - 43371584
Alignment:
Q  663 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 712  Q
    |||||||||||||| ||| |||||||| |||||||||||||||| |||||    
T  43371633 gttttccccgattttaaaatacgggtacgggacgggtaacggggatatat 43371584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 661 - 741
Target Start/End: Complemental strand, 14331609 - 14331534
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 741  Q
    ||||||||||| |||| ||| ||| ||||||||||||||||||||| |||     || ||||||| |||||||||||||||    
T  14331609 gggttttcccctatttaaaaatacaggtatgggacgggtaacggggatat-----atgtacccactccgaacccataccca 14331534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 672
Target Start/End: Original strand, 6027811 - 6027881
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    |||||||| |||||| |||| | ||||||| || ||||||  ||| | |||||||||||||||||||||||    
T  6027811 taggcatgacaacaaaacccatactcgtggttatccgcccgaaccaaacccaatttgacgggttttccccg 6027881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 676
Target Start/End: Complemental strand, 26755919 - 26755845
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 676  Q
    |||||||| |||||| |||||| | | |||||||| ||||| ||| | ||| |||||||||||||| ||||||||    
T  26755919 taggcatgacaacaaaacccgtgcccatgggtacctgcccaaaccaaccccgatttgacgggtttttcccgattt 26755845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 775 - 897
Target Start/End: Complemental strand, 38686641 - 38686514
Alignment:
Q  775 acccctttttatataaatagaaacacaaccctagat-----catttcactccagtccaaaaggcagatgtcattgtcagacggtacttttctggattctc 869  Q
    |||||||| |||||||||| ||| ||||||||||||     |||||||||||||| |||| || |||||||| |||||||||  |||||||||| |||||    
T  38686641 acccctttctatataaatacaaagacaaccctagattatttcatttcactccagttcaaatggaagatgtcactgtcagacgacacttttctgggttctc 38686542  T
Q  870 tctcaagcagtcaacgctgctcacaaag 897  Q
    |||||||||||||||   ||||||||||    
T  38686541 tctcaagcagtcaacatcgctcacaaag 38686514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 663 - 813
Target Start/End: Original strand, 10778576 - 10778721
Alignment:
Q  663 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnnnn 762  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||  ||      ||||||||||||||||| ||||| |||| |||||||         
T  10778576 gtttttcccgatttcaaaacacgggtatgggacgggtaacggggttatagatat-----ccaccccgaacccatactcatacccgtctcaaatgtaaaaa 10778670  T
Q  763 nnttannnnnnnacccctttttatataaatagaaacacaaccctagatcat 813  Q
       ||       |||||||||||||||||||||||||||||||||||||||    
T  10778671 aaatatttttttacccctttttatataaatagaaacacaaccctagatcat 10778721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 29936498 - 29936407
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  29936498 gggttttccccgatctcaaaatacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 29936407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 661 - 811
Target Start/End: Complemental strand, 34085317 - 34085170
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 760  Q
    ||||||| ||||||||||||  ||| |||||||| ||||||||||||||||| ||     |||||||||||||||||||||||||||||| ||||||       
T  34085317 gggtttttcccgatttcaaaacacgagtatgggatgggtaacggggttatatgta-----cccaccccgaacccatacccatactcgtcctaaatgtaaa 34085223  T
Q  761 nnnnt--tannnnnnnacccctttttatataaatagaaacacaaccctagatc 811  Q
        |  |        |||||||||||||||||||||||||||||||||||||    
T  34085222 aaattattttttttttacccctttttatataaatagaaacacaaccctagatc 34085170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 18354087 - 18354178
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  | |||||||||||||||||||||  |||||   |  | ||||||||||||| |||||||||||||||||||||||    
T  18354087 gggttttccccgatttcaaaacatgggtatgggacgggtaacggg--tatat---aagttcccaccccgaaccgatacccatactcgtcccaaatgt 18354178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 661 - 705
Target Start/End: Complemental strand, 5181121 - 5181077
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  5181121 gggttttccccgatttcaaaatacgggtatgggacgggtaacggg 5181077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 17135029 - 17134938
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||  |||||   |  ||||  |||||||||||||||||||||||||||| ||||    
T  17135029 gggttttccccgatttcaaaacacgggtatgagacgggtaacggg--tatat---aggtaccatccccgaacccatacccatactcgtcccatatgt 17134938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 601 - 676
Target Start/End: Original strand, 19003575 - 19003650
Alignment:
Q  601 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 676  Q
    |||||||||||||||| |||||| | | |||||||||||||| | | | ||| |||||||||||||||||||||||    
T  19003575 ttaggcatggcaacaaaacccgtgcccatgggtacccgcccaaagcaaccccgatttgacgggttttccccgattt 19003650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 19572519 - 19572610
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||| ||||||||||||  ||||||||||||| |||||||||  |||||   |  |||||||||||||||||||| ||||| ||||||||||||    
T  19572519 gggtttttcccgatttcaaaacacgggtatgggacaggtaacggg--tatat---aggtacccaccccgaacccatactcatacccgtcccaaatgt 19572610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 36187227 - 36187318
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||| ||||||||||||| || ||||||||||||    
T  36187227 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccctgaacccatacccaaacccgtcccaaatgt 36187318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 663 - 757
Target Start/End: Complemental strand, 28298014 - 28297925
Alignment:
Q  663 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  28298014 gttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 28297925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 660 - 712
Target Start/End: Original strand, 19003672 - 19003724
Alignment:
Q  660 cgggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 712  Q
    |||||||||||||||| |||| |||||||||||||||| |||||||| |||||    
T  19003672 cgggttttccccgattacaaaatacgggtatgggacggataacggggatatat 19003724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 662 - 705
Target Start/End: Original strand, 3627993 - 3628036
Alignment:
Q  662 ggttttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  3627993 ggttttccccgatttcaaaacacgggtatgggacgggtaacggg 3628036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 661 - 712
Target Start/End: Original strand, 16237311 - 16237362
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 712  Q
    |||||||||||||||||||| |||||||| ||||||||||||| || |||||    
T  16237311 gggttttccccgatttcaaaatacgggtaagggacgggtaacgaggatatat 16237362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 51421940 - 51421849
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||| |||||| |||||  ||||||||||||||||||||  |  |||||   || ||||||||||||||||||||||| || ||||||||||||    
T  51421940 gggtttttcccgatctcaaaacacgggtatgggacgggtaacatg--tatat---atgtacccaccccgaacccatacccaaacccgtcccaaatgt 51421849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 672
Target Start/End: Complemental strand, 20774745 - 20774675
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    ||||||||||||||| |||| | ||||||| |||||||||  ||| | ||||||||||||| |||||||||    
T  20774745 taggcatggcaacaaaacccatactcgtggttacccgcccgaaccaaacccaatttgacggattttccccg 20774675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 668
Target Start/End: Complemental strand, 38686829 - 38686763
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttc 668  Q
    |||||||| |||||||||  || | |||||||||||||| ||||||||||| |||| ||||||||||    
T  38686829 taggcatgacaacaatacatgtacccgtgggtacccgcctatacccatcccgattttacgggttttc 38686763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 652 - 702
Target Start/End: Original strand, 44632139 - 44632189
Alignment:
Q  652 caatttgacgggttttccccgatttcaaagtacgggtatgggacgggtaac 702  Q
    ||||||||| ||||||| |||||||||||  ||||||||||||||||||||    
T  44632139 caatttgactggttttctccgatttcaaaacacgggtatgggacgggtaac 44632189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 661 - 705
Target Start/End: Complemental strand, 24710929 - 24710885
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    |||||||||||||| |||||  |||||||||||||||||||||||    
T  24710929 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg 24710885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 629 - 676
Target Start/End: Original strand, 10450014 - 10450061
Alignment:
Q  629 tgggtacccgcccatacccatcccaatttgacgggttttccccgattt 676  Q
    |||||||||||||| ||| | |||||||||||||||||||||| ||||    
T  10450014 tgggtacccgcccaaaccaaccccaatttgacgggttttccccaattt 10450061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 719 - 757
Target Start/End: Complemental strand, 13390442 - 13390404
Alignment:
Q  719 tacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  13390442 tacccaccccgaactcatacccatacccgtcccaaatgt 13390404  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 719 - 757
Target Start/End: Complemental strand, 23966902 - 23966864
Alignment:
Q  719 tacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  23966902 tacccaccccgaacccatactcatacccgtcccaaatgt 23966864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 672
Target Start/End: Complemental strand, 29936601 - 29936531
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    |||||||| |||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||||||    
T  29936601 taggcatgacaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttccccg 29936531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 661 - 711
Target Start/End: Original strand, 33293538 - 33293588
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttata 711  Q
    ||||||| ||||||||||||  ||||||||||||||||||| |||| ||||    
T  33293538 gggtttttcccgatttcaaaacacgggtatgggacgggtaatggggatata 33293588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 663 - 705
Target Start/End: Original strand, 42707846 - 42707888
Alignment:
Q  663 gttttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    |||||| |||||||||||  |||||||||||||||||||||||    
T  42707846 gttttctccgatttcaaaacacgggtatgggacgggtaacggg 42707888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 702
Target Start/End: Complemental strand, 16409024 - 16408983
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaac 702  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  16409024 gggttttccccaatttcaaaacacgggtatgggacgggtaac 16408983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 704
Target Start/End: Original strand, 16433176 - 16433217
Alignment:
Q  663 gttttccccgatttcaaagtacgggtatgggacgggtaacgg 704  Q
    |||||| |||||||||||  ||||||||||||||||||||||    
T  16433176 gttttctccgatttcaaaacacgggtatgggacgggtaacgg 16433217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 6e-21; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 778 - 882
Target Start/End: Original strand, 10043401 - 10043505
Alignment:
Q  778 cctttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggtacttttctggattctctctcaagc 877  Q
    |||||||||||||||| |||||||| |||||||||||||||||  |||| || | || ||||||||||||||||  |||||| ||| || ||||||||||    
T  10043401 cctttttatataaatacaaacacaaacctagatcatttcactctggtccgaacgacaaatgtcattgtcagacgacacttttatgggttttctctcaagc 10043500  T
Q  878 agtca 882  Q
    |||||    
T  10043501 agtca 10043505  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 661 - 813
Target Start/End: Original strand, 30616288 - 30616437
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 760  Q
    ||||||||||||||||||||  |||| |||||||||||||||| |||||||| |||     ||||||||||||||||||||||| ||||||||| ||       
T  30616288 gggttttccccgatttcaaaacacggatatgggacgggtaacgaggttatatataa-----ccaccccgaacccatacccatacccgtcccaaacgtaaa 30616382  T
Q  761 nnnnt--tannnnnnnacccctttttatataaatagaaacacaaccctagatcat 813  Q
        |  |        |||||||||||||||||||||||||||||||||||||||    
T  30616383 aaattattttttttttacccctttttatataaatagaaacacaaccctagatcat 30616437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 23546949 - 23547040
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| |||||||||||||||    
T  23546949 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaactcgtcccaaatgt 23547040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 44172707 - 44172616
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  44172707 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aagtacccaccccgaacccatacccaaacccgtcccaaatgt 44172616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 44179407 - 44179316
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  44179407 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aagtacccaccccgaacccatacccaaacccgtcccaaatgt 44179316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 662 - 757
Target Start/End: Complemental strand, 39728751 - 39728661
Alignment:
Q  662 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||| |||| ||||| ||||||||||||| ||||||||||    ||| |||  ||||||||||||||||||||||| || ||||||||||||    
T  39728751 ggttttcctcgatctcaaaatacgggtatgggatgggtaacggg----tatataag-tacccaccccgaacccatacccaaacccgtcccaaatgt 39728661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 661 - 705
Target Start/End: Original strand, 48390824 - 48390868
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  48390824 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg 48390868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 661 - 744
Target Start/End: Original strand, 10043289 - 10043367
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatac 744  Q
    |||||||||| | |||||||  | ||||||||||||||||||||||||||     ||  |||||||||||||||||||||||||    
T  10043289 gggttttccctggtttcaaaacatgggtatgggacgggtaacggggttat-----atgcacccaccccgaacccatacccatac 10043367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 601 - 672
Target Start/End: Original strand, 39655182 - 39655253
Alignment:
Q  601 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    |||||||||||||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||||||    
T  39655182 ttaggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttccccg 39655253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 672
Target Start/End: Original strand, 7469688 - 7469758
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    ||||||||||||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||||||    
T  7469688 taggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttccccg 7469758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 719 - 757
Target Start/End: Complemental strand, 34154442 - 34154404
Alignment:
Q  719 tacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  34154442 tacccaccccgaacccatacccatacccgtcccaaatgt 34154404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 661 - 705
Target Start/End: Original strand, 44953442 - 44953486
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    |||||||||||||| |||||  |||||||||||||||||||||||    
T  44953442 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg 44953486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 676
Target Start/End: Original strand, 1772308 - 1772383
Alignment:
Q  601 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 676  Q
    |||||||||||||||| ||  || | | |||||||| ||||| ||| ||||| ||||||||| |||||||||||||    
T  1772308 ttaggcatggcaacaaaacatgtgcccatgggtacctgcccaaaccaatcccgatttgacggattttccccgattt 1772383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 668
Target Start/End: Original strand, 10043195 - 10043258
Alignment:
Q  605 gcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttc 668  Q
    ||||| ||||||||| |||   |||||||||||| ||||||| | |||||||||||||||||||    
T  10043195 gcatgacaacaatactcgtatccgtgggtacccgaccataccaaccccaatttgacgggttttc 10043258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 34026035 - 34025944
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  || |||||||||||||||||| |  |||||   |  |  ||||||||||| ||||||||||| ||||||||||||    
T  34026035 gggttttccccgatttcaaaacacaggtatgggacgggtaacgag--tatat---aggtttccaccccgaactcatacccatacccgtcccaaatgt 34025944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 39655280 - 39655371
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| |||||  |||||||||||||||||||| ||  |||||   |  |||||||||| |||||||||||| || |||| |||||||    
T  39655280 gggttttccccgatctcaaaacacgggtatgggacgggtaacagg--tatat---aggtacccaccccaaacccatacccaaacccgtctcaaatgt 39655371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 49580145 - 49580054
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| |||||  ||||||||||||||||||||| |  |||||   |  |||||||| ||||||||||| || || ||||||||||||    
T  49580145 gggttttccccgatctcaaaacacgggtatgggacgggtaacgag--tatat---aggtacccacctcgaacccatactcaaacccgtcccaaatgt 49580054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 720 - 757
Target Start/End: Original strand, 22535902 - 22535939
Alignment:
Q  720 acccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  22535902 acccaccccgaacccatacacatactcgtcctaaatgt 22535939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 702
Target Start/End: Complemental strand, 49025761 - 49025720
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaac 702  Q
    |||||||||||||| |||||  ||||||||||||||||||||    
T  49025761 gggttttccccgatctcaaaacacgggtatgggacgggtaac 49025720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 661 - 756
Target Start/End: Complemental strand, 33474 - 33384
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 756  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||||   || ||||||||||||||||||||||| ||||||||| ||||    
T  33474 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatat---atgtacccaccccgaacccatacccaaactcgtcccgaatg 33384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 5863390 - 5863481
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||||   |  |||||||| |||||||||||||| || ||||||||||||    
T  5863390 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatat---agatacccacctcgaacccatacccaaacccgtcccaaatgt 5863481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 27738853 - 27738762
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  ||||||||||||||||||||   | |||||   || ||||||||||||||||||||||| || ||||||||||||    
T  27738853 gggttttccccgatttcaaaacacgggtatgggacgggtaac--agatatat---atgtacccaccccgaacccatacccaaacccgtcccaaatgt 27738762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 32532621 - 32532530
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||  |||||   |  |||||||||||||||||||| ||||| ||||||||||||    
T  32532621 gggttttccccgatttcaaaacacgggtatgggacgggtaatggg--tatat---aggtacccaccccgaacccatactcatacccgtcccaaatgt 32532530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 32853925 - 32853834
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  32853925 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 32853834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 661 - 756
Target Start/End: Complemental strand, 2367407 - 2367317
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 756  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || |||||||||||    
T  2367407 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aagtacccaccccgaacccatacccaaacccgtcccaaatg 2367317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 3483930 - 3484021
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| || ||  |||||||||||| ||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  3483930 gggttttccccgatctcgaaacacgggtatgggatgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 3484021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 672
Target Start/End: Original strand, 3483833 - 3483903
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    ||||||||||||||| |||| | ||| ||| |||||||||  ||| | |||||||||||||||||||||||    
T  3483833 taggcatggcaacaaaacccatactcatggttacccgcccgaaccaaacccaatttgacgggttttccccg 3483903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 750
Target Start/End: Original strand, 14410864 - 14410946
Alignment:
Q  663 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcc 750  Q
    |||||||| |||||||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || |||||    
T  14410864 gttttcccagatttcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcc 14410946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 603 - 672
Target Start/End: Original strand, 10187991 - 10188060
Alignment:
Q  603 aggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    |||||||||||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||||||    
T  10187991 aggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttccccg 10188060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 661 - 702
Target Start/End: Complemental strand, 18908974 - 18908933
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaac 702  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  18908974 gggttttccccgatttcaaaatacggatatgggacgggtaac 18908933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 664 - 746
Target Start/End: Original strand, 29199895 - 29199972
Alignment:
Q  664 ttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactc 746  Q
    ||||||||||||||||| |||||||| |||||||||||| ||| ||||| | ||||    |||||||||||||||||| ||||    
T  29199895 ttttccccgatttcaaaatacgggtacgggacgggtaacagggatatatgt-atct----accccgaacccatacccaaactc 29199972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 665 - 705
Target Start/End: Original strand, 20610993 - 20611033
Alignment:
Q  665 tttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  20610993 tttccccgatttcaaaatacgggtaggggacgggtaacggg 20611033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 661 - 741
Target Start/End: Original strand, 28079703 - 28079778
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 741  Q
    ||||||||||||||||||||  | ||||| |||||||||||||||| |||     |  |||||||||||||||||||||||    
T  28079703 gggttttccccgatttcaaaacatgggtacgggacgggtaacggggatat-----aggtacccaccccgaacccataccca 28079778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 661 - 705
Target Start/End: Complemental strand, 30986334 - 30986290
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    |||||||||||||| |||||  |||||||||||||||||||||||    
T  30986334 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg 30986290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 12141466 - 12141375
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||| || |||||  |||| |||||||||||| |||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  12141466 gggttttccccaatctcaaaacacggatatgggacgggtgacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 12141375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 711
Target Start/End: Complemental strand, 20349142 - 20349095
Alignment:
Q  664 ttttccccgatttcaaagtacgggtatgggacgggtaacggggttata 711  Q
    |||||||||||||||||  |||||||||||||| ||||||||| ||||    
T  20349142 ttttccccgatttcaaaacacgggtatgggacgagtaacggggatata 20349095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 672
Target Start/End: Complemental strand, 30986432 - 30986361
Alignment:
Q  601 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    |||||||||||||||| |||| | | ||||| |||||||||  ||| | | |||||||||||||||||||||    
T  30986432 ttaggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaactcaatttgacgggttttccccg 30986361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 672
Target Start/End: Complemental strand, 31496612 - 31496542
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    ||||||||||||||| |||| | | ||||| |||||| ||| ||| | | |||||||||||||||||||||    
T  31496612 taggcatggcaacaaaacccatacccgtggttacccgtccaaaccaaactcaatttgacgggttttccccg 31496542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 672
Target Start/End: Complemental strand, 31501998 - 31501928
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    ||||||||||||||| |||| | | ||||| |||||| ||| ||| | | |||||||||||||||||||||    
T  31501998 taggcatggcaacaaaacccatacccgtggttacccgtccaaaccaaactcaatttgacgggttttccccg 31501928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 702
Target Start/End: Complemental strand, 14506167 - 14506126
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaac 702  Q
    ||||||||||||||||||||  || |||||||||||||||||    
T  14506167 gggttttccccgatttcaaaacacaggtatgggacgggtaac 14506126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 4583200 - 4583109
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||||   |  | |||||||| ||||||||||||||| ||||||||||||    
T  4583200 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatat---aggttcccaccccaaacccatacccatacccgtcccaaatgt 4583109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 4920907 - 4920816
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  || |||||||||||||||||||| || ||||||||||||    
T  4920907 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aggtatccaccccgaacccatacccaaacccgtcccaaatgt 4920816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 600 - 671
Target Start/End: Original strand, 10822447 - 10822518
Alignment:
Q  600 cttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttcccc 671  Q
    ||||| ||||||||||||||| |||| | |||||||||||||| ||||| | | ||||||||||||||||||    
T  10822447 cttagacatggcaacaatacctgtccccatgggtacccgcccaaacccacctcgatttgacgggttttcccc 10822518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 740
Target Start/End: Original strand, 10822534 - 10822608
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccc 740  Q
    |||||||| |||||||||||  |||||||| |||||||||||||||||||     || ||||||||||||||||||||||    
T  10822534 gggttttctccgatttcaaaacacgggtataggacgggtaacggggttat-----atgtacccaccccgaacccataccc 10822608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 15890287 - 15890197
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||| |||||||||||  |||||||||||||||||||||||  |||||   |  |||||| ||||||||||||||||||| ||||||||||||    
T  15890287 gggttttctccgatttcaaaacacgggtatgggacgggtaacggg--tatat---aggtaccca-cccgaacccatacccatacccgtcccaaatgt 15890197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 757
Target Start/End: Original strand, 17853301 - 17853391
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||  ||||||||||||||||||||  || |||||   |  ||||||| |||||||||||||||||| ||||||||||||    
T  17853301 gggttttccccgatttcaaac-acgggtatgggacgggtaac--ggatatat---agatacccactccgaacccatacccatacccgtcccaaatgt 17853391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 676
Target Start/End: Complemental strand, 2681394 - 2681320
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 676  Q
    ||||||||||||||| || ||| | | |||||||||| ||| ||| | | |||||||||||||||||||||||||    
T  2681394 taggcatggcaacaaaactcgtgcccatgggtacccgtccaaaccaacctcaatttgacgggttttccccgattt 2681320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 775 - 813
Target Start/End: Original strand, 10822647 - 10822685
Alignment:
Q  775 acccctttttatataaatagaaacacaaccctagatcat 813  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  10822647 acccctttttatataaatagaaacacaaccttagatcat 10822685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 663 - 757
Target Start/End: Original strand, 12866561 - 12866650
Alignment:
Q  663 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||| |||||||||||  | |||||||||||||||||| ||  |||||   |  |||||||| ||||||||||||||||| ||||||||||||    
T  12866561 gttttctccgatttcaaaacatgggtatgggacgggtaacagg--tatat---aggtacccaccgcgaacccatacccatacccgtcccaaatgt 12866650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 739
Target Start/End: Original strand, 23045000 - 23045072
Alignment:
Q  662 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacc 739  Q
    ||||||||||||||||||| |||||||| |||| ||||||||| | |||     || |||||||||||||||||||||    
T  23045000 ggttttccccgatttcaaaatacgggtacgggatgggtaacggagatat-----atgtacccaccccgaacccatacc 23045072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 664 - 741
Target Start/End: Original strand, 28569032 - 28569104
Alignment:
Q  664 ttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 741  Q
    ||||||||||||||||| | |||||| |||||||||||||||| |||     |  |||||||||||||||||||||||    
T  28569032 ttttccccgatttcaaaatgcgggtacgggacgggtaacggggatat-----aggtacccaccccgaacccataccca 28569104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 665 - 757
Target Start/End: Original strand, 22694913 - 22695000
Alignment:
Q  665 tttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||||||||| ||||| |||||||||||||||  |||||||  ||||    |  ||||||||||||||||||||||| || ||||||||||||    
T  22694913 tttccccgatctcaaaatacgggtatgggacgactaacggg--tatag---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 22695000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 719 - 757
Target Start/End: Complemental strand, 1218783 - 1218745
Alignment:
Q  719 tacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  1218783 tacccactccgaacccatacccatacccgtcccaaatgt 1218745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 668
Target Start/End: Complemental strand, 4921004 - 4920938
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttc 668  Q
    ||||||||||||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||    
T  4921004 taggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttc 4920938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 719 - 757
Target Start/End: Complemental strand, 10127109 - 10127071
Alignment:
Q  719 tacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  10127109 tacccaccccgaacccatacccaaacccgtcccaaatgt 10127071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 719 - 757
Target Start/End: Original strand, 12834635 - 12834673
Alignment:
Q  719 tacccaccccgaacccatacccatactcgtcccaaatgt 757  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  12834635 tacctaccccgaacccatacccatacccgtcccaaatgt 12834673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 598 - 676
Target Start/End: Original strand, 23044898 - 23044976
Alignment:
Q  598 ttcttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 676  Q
    |||||||||||||||| || | |||| | | |||||||||||||| ||| | ||| |||||||||||||| ||| ||||    
T  23044898 ttcttaggcatggcaaaaaaatccgtgcacatgggtacccgcccaaaccaaccccgatttgacgggtttttcccaattt 23044976  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 633 - 702
Target Start/End: Original strand, 27302714 - 27302784
Alignment:
Q  633 tacccgcccatacccatcccaatttgacggg-ttttccccgatttcaaagtacgggtatgggacgggtaac 702  Q
    |||||| ||| ||| |||||||||||||||| |||||||||||||||||  |||| |||| ||||| ||||    
T  27302714 tacccgtccaaaccaatcccaatttgacgggattttccccgatttcaaaacacggatatgagacggataac 27302784  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 672
Target Start/End: Original strand, 33727912 - 33727982
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 672  Q
    ||||||||||||||| |||| | | ||||| |||||||||  ||| | ||||||||||||| |||||||||    
T  33727912 taggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacggattttccccg 33727982  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 705
Target Start/End: Original strand, 33728012 - 33728053
Alignment:
Q  664 ttttccccgatttcaaagtacgggtatgggacgggtaacggg 705  Q
    ||||||||||| |||||  |||||||||||||||||||||||    
T  33728012 ttttccccgatctcaaaacacgggtatgggacgggtaacggg 33728053  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 702
Target Start/End: Original strand, 38006477 - 38006518
Alignment:
Q  661 gggttttccccgatttcaaagtacgggtatgggacgggtaac 702  Q
    ||||||||||| |||||||| ||||||||||||||| |||||    
T  38006477 gggttttccccaatttcaaaatacgggtatgggacgcgtaac 38006518  T

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Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 676
Target Start/End: Complemental strand, 67927 - 67853
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 676  Q
    ||||||||||||||| |||||| | | || ||||||||||| ||| | ||| ||||||| |||||||||||||||    
T  67927 taggcatggcaacaaaacccgtgcccatgagtacccgcccaaaccaaccccgatttgacaggttttccccgattt 67853  T

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Target: scaffold0008; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 676
Target Start/End: Complemental strand, 75770 - 75696
Alignment:
Q  602 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 676  Q
    ||||||||||||||| |||||| | | || ||||||||||| ||| | ||| ||||||| |||||||||||||||    
T  75770 taggcatggcaacaaaacccgtgcccatgagtacccgcccaaaccaaccccgatttgacaggttttccccgattt 75696  T

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Target: scaffold0244 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 711
Target Start/End: Original strand, 4589 - 4638
Alignment:
Q  662 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttata 711  Q
    |||||||||| |||||||| |||||||||||||| |||||| ||| ||||    
T  4589 ggttttccccaatttcaaaatacgggtatgggacaggtaacagggatata 4638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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