View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6711_low_10 (Length: 392)
Name: NF6711_low_10
Description: NF6711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6711_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 50352586 - 50352810
Alignment:
| Q |
13 |
tggacatcattgcaaaaacagattggttgaaacgatctaagttctaacctctaaatnnnnnnnggtttgatggtttcccataatccacctctttccacac |
112 |
Q |
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| T |
50352586 |
tggacatcattgcaaaaacagattggttgaaacgatctaagttctaacctctaaataaaaaaaggtttgatggtttcccataatccacctctttccgcac |
50352685 |
T |
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| Q |
113 |
ctcatttgcggcattacacatgaaaaacatgtgcttctctttctcccccaaggaaatacttttgcgacaatcttacgcgagtaaggcaacactccacaga |
212 |
Q |
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| T |
50352686 |
ctcatttgcggcattacacatgaaaaacatgtgcttctctttctcctccaaggaaatacttttgcgacaatcttacgcgagtaaggcaacactccacaga |
50352785 |
T |
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| Q |
213 |
gatactttttagaactgagttccac |
237 |
Q |
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| T |
50352786 |
gatactttttagaactgagttccac |
50352810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 234 - 377
Target Start/End: Original strand, 50361160 - 50361300
Alignment:
| Q |
234 |
ccacaattaattatgcagactatttatcattacattttttgtcagattactcattgagtagtagtagtagctaaaacatgtgaaaatgcatacctgctgc |
333 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50361160 |
ccacaattaattatgcagactatttatcattaccttttttgtcagattactcattgagta---gtagtagctaaaacatgtgaaaatgcatacctgctgc |
50361256 |
T |
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| Q |
334 |
ggctcatattaaggctataataggggtttcccattcatattgat |
377 |
Q |
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| T |
50361257 |
ggctcatattaaggctataataggggtttcccattcatattgat |
50361300 |
T |
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