View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6711_low_13 (Length: 328)
Name: NF6711_low_13
Description: NF6711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6711_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 24 - 319
Target Start/End: Original strand, 5622095 - 5622390
Alignment:
| Q |
24 |
attaattggttatgtgctttacatctttaccgttggtgtgcaaatagatttgagcatggtaaccagaacaggacacaaggtttggaccattgcaataatg |
123 |
Q |
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| T |
5622095 |
attaattggttatgtgctttacatctttaccattggtgtgcaaattgatttgagcatggtaaccagaacaggacacaaggtttggaccattgcaataatg |
5622194 |
T |
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| Q |
124 |
ggatttgttgtgcctatactgtttagttttgtgcctcaatttgtggtgttactagaaaaagattatcgattcgaagatgtgactaaagcacatttgattg |
223 |
Q |
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| T |
5622195 |
ggatttgtcgtgcctatactgtttagttttgtgcctcaatttgtggtgttactagaaaaatattatcgattcgaagatgtgactaaaccacatttgattg |
5622294 |
T |
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| Q |
224 |
tagatatttatagggtggcaagaatacatagctcggtttcattcgcagtcactgctacactccttaatgaacttaaaattcttaactccaaactcg |
319 |
Q |
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| T |
5622295 |
tagatatttatagggtggtaagaatacatagctcggttgcattcgcagtcactgctacactcctcaatgaacttaaaattcttaactccgaactcg |
5622390 |
T |
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Back To:
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Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 24 - 319
Target Start/End: Complemental strand, 35299627 - 35299329
Alignment:
| Q |
24 |
attaattggttatgtgctttacatctttaccgttggtgtgcaaatagatttgagcatggtaaccagaacaggacacaaggtttggaccattgcaataatg |
123 |
Q |
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|||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||| ||| |
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| T |
35299627 |
attaattggttatggactttacatctttaccactgctgtgcaaatggatttgagcatggtaatgagaacaggacacaaggtttggaccattacaatcatg |
35299528 |
T |
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| Q |
124 |
ggatttgttgtgcctatactgtttagttttgtgcctcaatttgtggtgtt---actagaaaaagattatcgattcgaagatgtgactaaagcacatttga |
220 |
Q |
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|||||||| |||||||||||||||||| |||||||| |||| ||||||| | ||| ||| |||| |||||||| |||| ||||||||| ||| ||| |
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| T |
35299527 |
ggatttgtcgtgcctatactgtttagtattgtgcctaaattcttggtgttagaagtagtaaatgattttcgattcggagatatgactaaagaacagttgg |
35299428 |
T |
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| Q |
221 |
ttgtagatatttatagggtggcaagaatacatagctcggtttcattcgcagtcactgctacactccttaatgaacttaaaattcttaactccaaactcg |
319 |
Q |
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| |||||||| || |||||| | |||||||||||||||| ||||||||||||||||||| ||||| || ||||||||||| ||||||||| |||||| |
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| T |
35299427 |
aagcagatatttttaaggtggcgataatacatagctcggttgcattcgcagtcactgctacgctcctcaacgaacttaaaatccttaactccgaactcg |
35299329 |
T |
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