View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6711_low_21 (Length: 248)
Name: NF6711_low_21
Description: NF6711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6711_low_21 |
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| [»] chr6 (6 HSPs) |
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| [»] scaffold0302 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 897526 - 897294
Alignment:
| Q |
16 |
atccgcattccatttccaaacattttggggagggggacaccgtactactgacaatctactgccaaacaatctctttccatgttttaatcacttgaatttt |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
897526 |
atccacattccatttccaaacattttggggagggggacaccgtactactgacaatctactgccaaacaatctctttccatgttttaatcacttgaatttt |
897427 |
T |
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| Q |
116 |
atacaaatggaccacgtgatacacacacatgttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccacatcacattggtaaca |
215 |
Q |
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| T |
897426 |
atacaaatggaccacgtgatacacacacatgttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccacatcacattggtaaca |
897327 |
T |
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| Q |
216 |
agctgccatgacaacttctgataaatcctattc |
248 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
897326 |
agctgccatgacaacttctgataaatcctattc |
897294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 1236937 - 1237157
Alignment:
| Q |
21 |
cattccatttccaaacattttggggagggggacaccgtactactgacaatctactgccaaacaatctctttccatgttttaatcacttgaattttataca |
120 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
1236937 |
cattccattttcaaacattttgtggagggggacaccgtactgctgacaatctactaccaa-caatctctttccatgttttaatctcttgaattttataca |
1237035 |
T |
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| Q |
121 |
aatggaccacgtgat--acacacacatgttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccacatcacattggtaacaagc |
218 |
Q |
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| T |
1237036 |
aatggaccgcgtgatacacacacacacattctatgaagggttggacacttgag-----agaccacccaatccccaacaccacatcacattggtaacaagc |
1237130 |
T |
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| Q |
219 |
tgccatgacaacttctgataaatcctat |
246 |
Q |
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| T |
1237131 |
-gccatgacaacttctgataaatcctat |
1237157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 1182766 - 1182632
Alignment:
| Q |
80 |
aacaatctctttccatgttttaatcacttgaattttatacaaat-----ggaccacgtgatacacacacatgttctacgaagggtttgagacttgagaaa |
174 |
Q |
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| T |
1182766 |
aacaatatttttccatgttttaatctcttgaattttatacaaatatattggaccgcgtgatacacacacatattctatgaagggtttgagacttgagaga |
1182667 |
T |
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| Q |
175 |
ccaaaccacccaatccccaacaccacatcacattgg |
210 |
Q |
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| T |
1182666 |
cc-acctacctaatttccaacaccacatcacattgg |
1182632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 239
Target Start/End: Complemental strand, 1193707 - 1193545
Alignment:
| Q |
80 |
aacaatctctttccatgttttaatcacttgaattttatacaaa---tggaccacgtgatacacacacat----gttctacgaagggtttgagacttgaga |
172 |
Q |
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| T |
1193707 |
aacaatctttttccatgttttaatctcttgaattttatacaaatattggaccgcgtgatacacacacatattcattcaatgaagggtttgagactctaga |
1193608 |
T |
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| Q |
173 |
aaccaaaccacccaatccccaacaccacatcacattggtaacaagctgccatgacaacttctgataa |
239 |
Q |
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||| | | ||| ||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |
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| T |
1193607 |
gacc-acctacctaatccccaacaccacatcacattggaaacaa---gccatgacaacttatgataa |
1193545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 1193757 - 1193716
Alignment:
| Q |
15 |
catccgcattccatttccaaacattttggggagggggacacc |
56 |
Q |
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| T |
1193757 |
catccacattccatttcaaaacattttgtggagggggacacc |
1193716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 1182815 - 1182775
Alignment:
| Q |
16 |
atccgcattccatttccaaacattttggggagggggacacc |
56 |
Q |
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|||| ||||||||||| |||||||||| ||||||||||||| |
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| T |
1182815 |
atccacattccatttcaaaacattttgtggagggggacacc |
1182775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 19953 - 19797
Alignment:
| Q |
81 |
acaatctctttccatgttttaatcacttgaattttatacaaatggaccacgtgatacacacacatgttctacgaagggtttgagacttgagaaaccaaac |
180 |
Q |
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| T |
19953 |
acaatctctttccatgttttaatctcttgagttttatacaaatggaccacgtgata----cacatattctatgaagggtttgagacttgagagacc-acc |
19859 |
T |
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| Q |
181 |
cacccaatccccaacaccacatcacattggtaacaagctgccatgacaacttctgataaatc |
242 |
Q |
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||| |||||||| |||||||||||||||| | ||||||||||||||||| ||||||||||| |
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| T |
19858 |
tacctaatccccagcaccacatcacattggcatcaagctgccatgacaacctctgataaatc |
19797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 20004 - 19960
Alignment:
| Q |
15 |
catccgcattccatttccaaacattttggggagggggacaccgta |
59 |
Q |
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| T |
20004 |
catccacattccattaccaaacattttgtggagggggacaacgta |
19960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 20257033 - 20257186
Alignment:
| Q |
81 |
acaatctctttccatgttttaatcacttgaattttatacaaatggaccacgtgatacacacacatgttctacgaagggtttgagacttgagaaaccaaac |
180 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||| ||| |||||||||||||||| ||| | | |
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| T |
20257033 |
acaatctatttccatgttttaatctcttgaattttatacaaatggaccacgtgat----acacatattctatgaaaggtttgagacttgagagacc-acc |
20257127 |
T |
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| Q |
181 |
cacccaatccccaacaccacatcacattggtaacaagctgccatgacaacttctgataa |
239 |
Q |
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||| |||||||||||| |||||||||||||| || ||||||||||||||||||||||| |
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| T |
20257128 |
tacctaatccccaacacgacatcacattggtatcaggctgccatgacaacttctgataa |
20257186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 20256982 - 20257040
Alignment:
| Q |
15 |
catccgcattccatttccaaacattttggggagggggacaccgtactactgacaatcta |
73 |
Q |
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||||| ||||||||| |||||||||||| ||||||||||||| || | ||||||||||| |
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| T |
20256982 |
catccacattccattaccaaacattttgtggagggggacaccatattgctgacaatcta |
20257040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 12857361 - 12857260
Alignment:
| Q |
140 |
acacatgttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccacatcacattggtaacaagctgccatgacaacttctgataa |
239 |
Q |
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|||||| ||||| |||||||||||||||||||| |||| | ||| |||||||| ||| |||||||||| | | ||||||||||||||||| |||||||| |
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| T |
12857361 |
acacatattctatgaagggtttgagacttgagagaccac-ctacctaatccccagcactacatcacatttgcatcaagctgccatgacaacctctgataa |
12857263 |
T |
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| Q |
240 |
atc |
242 |
Q |
| |
|
||| |
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|
| T |
12857262 |
atc |
12857260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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