View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6711_low_22 (Length: 245)

Name: NF6711_low_22
Description: NF6711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6711_low_22
NF6711_low_22
[»] chr2 (8 HSPs)
chr2 (68-234)||(10524200-10524366)
chr2 (68-227)||(17116694-17116854)
chr2 (83-229)||(39338695-39338841)
chr2 (88-229)||(387280-387420)
chr2 (74-170)||(7874454-7874550)
chr2 (74-170)||(14106343-14106440)
chr2 (98-170)||(7460839-7460912)
chr2 (74-170)||(5254419-5254511)
[»] chr3 (16 HSPs)
chr3 (68-226)||(47235806-47235964)
chr3 (74-227)||(31482991-31483143)
chr3 (68-229)||(2392321-2392482)
chr3 (68-229)||(2394085-2394246)
chr3 (74-227)||(34475577-34475728)
chr3 (68-229)||(20611888-20612048)
chr3 (68-227)||(53248007-53248167)
chr3 (74-229)||(45163960-45164115)
chr3 (76-229)||(17551062-17551210)
chr3 (74-226)||(43012484-43012635)
chr3 (68-229)||(19176608-19176770)
chr3 (74-170)||(30352262-30352356)
chr3 (68-198)||(9583870-9583999)
chr3 (84-170)||(23328181-23328268)
chr3 (74-170)||(40023393-40023490)
chr3 (74-170)||(45398959-45399056)
[»] chr1 (15 HSPs)
chr1 (74-231)||(5459264-5459421)
chr1 (68-231)||(5389237-5389399)
chr1 (68-229)||(24449745-24449906)
chr1 (68-231)||(46692634-46692797)
chr1 (74-229)||(41920557-41920717)
chr1 (102-229)||(31585608-31585736)
chr1 (96-231)||(6764224-6764359)
chr1 (149-231)||(30685800-30685882)
chr1 (68-129)||(6804745-6804806)
chr1 (74-170)||(46814288-46814385)
chr1 (74-126)||(30685745-30685797)
chr1 (97-170)||(7857816-7857890)
chr1 (74-112)||(24684312-24684350)
chr1 (147-229)||(24684372-24684453)
chr1 (74-110)||(31584858-31584894)
[»] chr5 (6 HSPs)
chr5 (68-231)||(18593346-18593509)
chr5 (74-228)||(34378204-34378358)
chr5 (81-231)||(698464-698614)
chr5 (68-206)||(7161831-7161969)
chr5 (70-225)||(18313460-18313614)
chr5 (68-229)||(29087587-29087745)
[»] chr8 (17 HSPs)
chr8 (68-229)||(20138531-20138693)
chr8 (68-229)||(31207177-31207338)
chr8 (74-231)||(37986679-37986836)
chr8 (74-226)||(24995215-24995368)
chr8 (74-229)||(9519604-9519760)
chr8 (76-231)||(12898098-12898252)
chr8 (74-226)||(41893223-41893374)
chr8 (77-231)||(32066119-32066273)
chr8 (74-225)||(34388828-34388977)
chr8 (134-227)||(22773606-22773699)
chr8 (68-146)||(16457290-16457368)
chr8 (74-129)||(22773820-22773875)
chr8 (156-231)||(16457364-16457439)
chr8 (74-229)||(36630943-36631084)
chr8 (68-142)||(35821432-35821506)
chr8 (74-144)||(38577610-38577681)
chr8 (74-128)||(35816067-35816121)
[»] chr7 (16 HSPs)
chr7 (77-231)||(5860112-5860266)
chr7 (68-229)||(44353378-44353540)
chr7 (68-229)||(47325700-47325861)
chr7 (68-231)||(37795092-37795255)
chr7 (78-231)||(38306364-38306517)
chr7 (68-201)||(31971949-31972082)
chr7 (68-231)||(10244285-10244448)
chr7 (74-226)||(3419476-3419628)
chr7 (74-201)||(3867249-3867376)
chr7 (74-227)||(25160920-25161071)
chr7 (106-229)||(33435215-33435337)
chr7 (74-170)||(3419217-3419313)
chr7 (74-229)||(41089570-41089723)
chr7 (68-141)||(40726320-40726392)
chr7 (97-170)||(34390125-34390199)
chr7 (76-170)||(6585045-6585140)
[»] scaffold0343 (1 HSPs)
scaffold0343 (68-229)||(5811-5972)
[»] chr6 (3 HSPs)
chr6 (68-231)||(3117596-3117759)
chr6 (75-199)||(10541967-10542091)
chr6 (68-189)||(14663222-14663343)
[»] chr4 (10 HSPs)
chr4 (68-229)||(8255132-8255293)
chr4 (68-229)||(8268550-8268711)
chr4 (68-228)||(30167380-30167539)
chr4 (69-231)||(30964544-30964702)
chr4 (107-226)||(4305833-4305951)
chr4 (68-170)||(8705959-8706061)
chr4 (74-138)||(20464786-20464850)
chr4 (85-229)||(31050493-31050636)
chr4 (97-170)||(2825946-2826019)
chr4 (74-170)||(35341161-35341256)
[»] scaffold0068 (1 HSPs)
scaffold0068 (68-229)||(35590-35748)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 10524366 - 10524200
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10524366 agcaccgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaactcccaaaccccaacacccaagctgagc 10524267  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaacacc 234  Q
    ||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  10524266 cacatatcgaagagcacctaaccgaaggatcatgcagctatcacaaacctcgcgacctccgaacacc 10524200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 17116694 - 17116854
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaa-ctcccaaaccccaacacccaagctgag 166  Q
    ||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||  |||||||| ||| || ||||||||||||||||||||    
T  17116694 agcactgtaaacacggtatccaccaccgcccatcgtcattactcacccacaaagaacaccctcaaaataaaaactctcagaccccaacacccaagctgag 17116793  T
Q  167 ccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctcc 227  Q
    |||| |  ||||||||||||||| || |||||| |||| ||||||||||||||||||||||    
T  17116794 ccacattacgaagagcacctaaccgatggatcaagtagatatcacaaacctcgcgacctcc 17116854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 83 - 229
Target Start/End: Original strand, 39338695 - 39338841
Alignment:
Q  83 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcgaagagc 182  Q
    |||||||||| || |||||||||||||||||||||||||||||||||  |||||||||||||| ||| |||||||||||||||| |||   |||||||||    
T  39338695 gtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccagacctcaacacccaagctgagtcacaattcgaagagc 39338794  T
Q  183 acctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||||    
T  39338795 acctaaccgaaggatcattcagctatcacaaacctcgcgacctccga 39338841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 387420 - 387280
Alignment:
Q  88 caccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcgaagagcaccta 187  Q
    |||||||| |||||||||||| |||||| |||||||||||||  |||||||||||||| |||||||||||||||||||||||| |||||||||||||||     
T  387420 caccaccgcccatcgtcactattcacccccaaagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacctatcgaagagcacctg 387321  T
Q  188 actgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    |||||| || |||| |||| ||  |||||||| |||||||||    
T  387320 actgaatgaacatgcagct-tccaaaacctcgtgacctccga 387280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 7874550 - 7874454
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctacaaataaaactcccaaaccccaacacccaagctgagccac 170  Q
    |||||||| |||||||| |||  ||||||||||||||||||| ||||||||| ||||  |||||||||||| | ||  ||||||||||||||||||||    
T  7874550 gtaaacacagtatccacaaccacccatcgtcactactcaccc-caaagaacatccctcaaaataaaactccaagacttcaacacccaagctgagccac 7874454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 14106343 - 14106440
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctacaaataaaactcccaaaccccaacacccaagctgagccac 170  Q
    |||||||| |||||||| |||   |||||||||||||||||| ||||||||| ||||  ||||||||||| || ||  ||||||||||||||||||||    
T  14106343 gtaaacacagtatccacaaccactcatcgtcactactcacccccaaagaacacccctcaaaataaaactctcagacttcaacacccaagctgagccac 14106440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 7460912 - 7460839
Alignment:
Q  98 catcgtcactactcacccacaaagaacaccctacaaa-taaaactcccaaaccccaacacccaagctgagccac 170  Q
    ||||||||||||||| || ||||||||||||  |||| ||||||||||| ||  ||||||||||||||||||||    
T  7460912 catcgtcactactcaaccccaaagaacacccctcaaaataaaactcccagacttcaacacccaagctgagccac 7460839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 5254511 - 5254419
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccac 170  Q
    |||||||| |||||||| |||  ||||||||||||||||||  ||||||||||||  |||  ||||||| || ||  |||||||||| |||||||||    
T  5254511 gtaaacacagtatccacaaccacccatcgtcactactcacc--caaagaacacccctcaa--aaaactctcagacttcaacacccaaactgagccac 5254419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 68 - 226
Target Start/End: Complemental strand, 47235964 - 47235806
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| || ||||||||||||||||||| |    
T  47235964 agcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactcgcagaccccaacacccaagctgaac 47235865  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctc 226  Q
    ||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  47235864 cacatttcgaagagcacctaaccgaaggatcatgcagctatcacaaacctcgcgacctc 47235806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 74 - 227
Target Start/End: Complemental strand, 31483143 - 31482991
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 173  Q
    ||||||| |||||||||||| || ||||||||||||| ||||||||||||||||||  ||| ||||||| |||||||||||||| |||||||||||| |     
T  31483143 gtaaacatggtatccaccactgttcatcgtcactactaacccacaaagaacacccttaaaa-aaaactctcaaaccccaacacctaagctgagccacatt 31483045  T
Q  174 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctcc 227  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  31483044 tcgaagagcacctaaccgaaggatcatgcagctatcacaaacctcgcgacctcc 31482991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 68 - 229
Target Start/End: Original strand, 2392321 - 2392482
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaa-taaaactcccaaaccccaacacccaagctgag 166  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||| ||||||||| | ||||||||||||||||||||    
T  2392321 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacacc-tacaaaataaaactcctagaccccaacacccaagctgag 2392419  T
Q  167 ccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    |||| | | ||||||  |||||| ||||||||||| ||||| |||||||||||||||||||||    
T  2392420 ccacattttgaagagatcctaaccgaaggatcatgcagctagcacaaacctcgcgacctccga 2392482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 68 - 229
Target Start/End: Original strand, 2394085 - 2394246
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaa-taaaactcccaaaccccaacacccaagctgag 166  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||| ||||||||| | ||||||||||||||||||||    
T  2394085 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacacc-tacaaaataaaactcctagaccccaacacccaagctgag 2394183  T
Q  167 ccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    |||| | | ||||||  |||||| ||||||||||| ||||| |||||||||||||||||||||    
T  2394184 ccacattttgaagagatcctaaccgaaggatcatgcagctagcacaaacctcgcgacctccga 2394246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 74 - 227
Target Start/End: Original strand, 34475577 - 34475728
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 173  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||  |||||| || ||||||||||| |||||||| ||| |     
T  34475577 gtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacacccttaaaa--aaactctcataccccaacacctaagctgagtcacatt 34475674  T
Q  174 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctcc 227  Q
    |||||||||||||||| ||||||||||  |||||||||||||||||||||||||    
T  34475675 tcgaagagcacctaaccgaaggatcatacagctatcacaaacctcgcgacctcc 34475728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 20612048 - 20611888
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| |||||||| |||||||||| || |||||||||||||||||||||||||||||||||   ||||||||||| | |||| |||||||||||||||     
T  20612048 agcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcagaataaaactcctagaccc-aacacccaagctgagt 20611950  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    ||| | |||||||||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  20611949 cacatttcgaagagcacctaaccgaaggatcattcagctatcacaaacctcgcgacctccga 20611888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 68 - 227
Target Start/End: Complemental strand, 53248167 - 53248007
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaa-ctcccaaaccccaacacccaagctgag 166  Q
    ||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||  |||||||| ||| || |||||||||||||| |||||    
T  53248167 agcactgtaaacacggtaaccaccaccgcccatcgtcactactcacccacaaagaacactctcaaaataaaaactctcagaccccaacacccaaactgag 53248068  T
Q  167 ccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctcc 227  Q
    |||| | ||||||||||| |||| ||||||||||  | |||||||||||||||||||||||    
T  53248067 ccacatttcgaagagcacataaccgaaggatcatacaactatcacaaacctcgcgacctcc 53248007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 45164115 - 45163960
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 173  Q
    ||||||||||||| || ||||| |||||||||||| ||||| ||||| ||||||||  |||||||||||| | ||||||||||||||||| |||||| |     
T  45164115 gtaaacacggtattcatcaccgcccatcgtcactaatcacctacaaataacaccctcaaaataaaactcctagaccccaacacccaagctaagccacatt 45164016  T
Q  174 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    |||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||    
T  45164015 tcgaagagcacctaaccgaaggatcatgcagctatcacaaacttcgtgacctccga 45163960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 76 - 229
Target Start/End: Complemental strand, 17551210 - 17551062
Alignment:
Q  76 aaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatc 175  Q
    ||||| |||| ||||||||| |||||||||||||||||| ||||||||||||||  ||||||||||| || |||||||||||||| ||||||||| | ||    
T  17551210 aaacaaggtaaccaccaccgcccatcgtcactactcaccgacaaagaacaccctcaaaataaaactctcagaccccaacacccaaactgagccacatttc 17551111  T
Q  176 gaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    ||||||||||||||      |||||| |||||||||||||||||||||||||||    
T  17551110 gaagagcacctaac-----catcatgcagctatcacaaacctcgcgacctccga 17551062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 43012635 - 43012484
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 173  Q
    |||||||||||||||||| |||||||||| |||||||||||  |||||||||||||  || ||||||||| | |||||||||||||||||||||||| |     
T  43012635 gtaaacacggtatccacccccgtccatcgccactactcacctccaaagaacaccctcaaattaaaactcctagaccccaacacccaagctgagccacatt 43012536  T
Q  174 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctc 226  Q
    ||||||||||||| || ||| ||||||| | ||  ||| ||||||||||||||    
T  43012535 tcgaagagcacctgaccgaacgatcatgcaacttccac-aacctcgcgacctc 43012484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 19176770 - 19176608
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| |||||||| |||||||||||| ||||||||||||||||||||  ||||||||||||  ||||||||| |||| ||||| |||||||||||||||    
T  19176770 agcacagtaaacacagtatccaccaccatccatcgtcactactcacccctaaagaacaccctcaaaataaaacacccagaccccgacacccaagctgagc 19176671  T
Q  168 cacgtatcgaagagcacctaactg--aaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    ||| |  |||||||||||| || |  |||||||||| ||||  ||| ||||| |||||||||||    
T  19176670 cacattacgaagagcacctgaccgaaaaggatcatgcagcttccac-aaccttgcgacctccga 19176608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 30352262 - 30352356
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccac 170  Q
    |||||||||||||||||||||  |||||||||||||||| ||||||||||||||||  ||| |||||||| | ||||||||||||||||||||||||    
T  30352262 gtaaacacggtatccaccaccacccatcgtcactactcatccacaaagaacaccct--aaaaaaaactccgagaccccaacacccaagctgagccac 30352356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 9583870 - 9583999
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||||||||||||| |||||||||||| | |||||||||||||| || ||||||||| |||  |||||||||||||| ||||||| |||||||| ||||    
T  9583870 agcaccgtaaacacgatatccaccaccgcctatcgtcactactca-ccgcaaagaacatcctcaaaataaaactcccagaccccaaaacccaagcagagc 9583968  T
Q  168 cacgtatcgaagagcacctaactgaaggatc 198  Q
    |||   ||||||||| ||| || ||||||||    
T  9583969 cacaattcgaagagcgcctgaccgaaggatc 9583999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 23328181 - 23328268
Alignment:
Q  84 tatccaccaccgtccatcgtcactactcacccacaaagaacacc-ctacaaataaaactcccaaaccccaacacccaagctgagccac 170  Q
    ||||||| |||  ||||||||||||||||||| ||||||||||| ||  |||||||||||||| ||  ||||||||||||||||||||    
T  23328181 tatccacaaccacccatcgtcactactcacccccaaagaacaccactcaaaataaaactcccagacttcaacacccaagctgagccac 23328268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 40023393 - 40023490
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaac-accctacaaataaaactcccaaaccccaacacccaagctgagccac 170  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||  |||||||  ||||  |||||||||||||| ||  |||||||| |||||||||||    
T  40023393 gtaaacacggtatccacaaccatccatcgtcactactcatcccaaaagaacgcccctcaaaataaaactcccagactacaacaccctagctgagccac 40023490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 45399056 - 45398959
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctac-aaataaaactcccaaaccccaacacccaagctgagccac 170  Q
    ||||||||  ||||||| | | |||||||||||||||||||| ||| |||||||| || ||||| |||||||||||  ||||||| ||| || |||||    
T  45399056 gtaaacacaatatccacaatcatccatcgtcactactcacccccaacgaacaccccacaaaatagaactcccaaacttcaacacctaagttgcgccac 45398959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 5459421 - 5459264
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |||||||||| ||| |||||||||||||||||||||||| |     
T  5459421 gtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccatcaaaataaaacttccagaccccaacacccaagctgagccacatt 5459322  T
Q  174 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    || ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  5459321 tcaaagagcacctaactgaaggatcatgcagctatcacaaacctcgcaacctccgaac 5459264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 68 - 231
Target Start/End: Original strand, 5389237 - 5389399
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  |||| |||||||||  |||||||||||||| |||||||||||||||||||||    
T  5389237 agcaccgtaaacacggtatccaccaccgcccatcgtcactactcacttacaa-gaacaccctcaaaataaaactcccagaccccaacacccaagctgagc 5389335  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    ||| ||||||||||||| |||| |||||| |||||||||| |||||||||||||||||||||||    
T  5389336 cacatatcgaagagcacttaaccgaaggaccatgtagctaacacaaacctcgcgacctccgaac 5389399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 68 - 229
Target Start/End: Original strand, 24449745 - 24449906
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||  |||||||||||| | |||||||||||||||||||||    
T  24449745 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacaccctcaaaataaaactcctagaccccaacacccaagctgagc 24449844  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    | | | |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||    
T  24449845 cgcatttcgaagagcacctaaccgaaggatcatgcaactatcacaaacctcgcgacctccga 24449906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 68 - 231
Target Start/End: Original strand, 46692634 - 46692797
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  46692634 agcactgtaaacacgatatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaacttccagaccccaacacccaagctgagc 46692733  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    ||| | ||||||||||| |||| | ||||| ||| |||||||||||||||||||||||||||||    
T  46692734 cacatttcgaagagcacttaaccggaggataatgcagctatcacaaacctcgcgacctccgaac 46692797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 41920717 - 41920557
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 173  Q
    ||||||||||||| |||||||| | |||||||||||||||||||||| ||||||||  |||||||||||| | |||||||||||||||||||||||| |     
T  41920717 gtaaacacggtattcaccaccgcctatcgtcactactcacccacaaaaaacaccctcaaaataaaactccaagaccccaacacccaagctgagccacatg 41920618  T
Q  174 tcgaagagcacctaactga-----aggatcatgtagctatcacaaacctcgcgacctccga 229  Q
      |||||||||||||||||     ||||||||| |||||||||||||||||||||||||||    
T  41920617 atgaagagcacctaactgaaggttaggatcatgcagctatcacaaacctcgcgacctccga 41920557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 31585608 - 31585736
Alignment:
Q  102 gtcactactcacccacaaagaacaccctacaaataaaactcccaaacccc-aacacccaagctgagccacgtatcgaagagcacctaactgaaggatcat 200  Q
    ||||||||||||||||||||||||||||  ||||||||||| || ||||| |||||||||||| |||||| | ||||||||||||||||  |||||||||    
T  31585608 gtcactactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagcttagccacatttcgaagagcacctaaccaaaggatcat 31585707  T
Q  201 gtagctatcacaaacctcgcgacctccga 229  Q
      |||||||||||||||||||||||||||    
T  31585708 acagctatcacaaacctcgcgacctccga 31585736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 231
Target Start/End: Original strand, 6764224 - 6764359
Alignment:
Q  96 tccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcgaagagcacctaactgaagg 195  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||||| ||||||  | ||||| |||||||| | |||||||||||||||| |||||    
T  6764224 tccatcgtcactactcacccacaaagaacatcctgaaaataaaactcccagaccccagtatccaagttgagccacatttcgaagagcacctaaccgaagg 6764323  T
Q  196 atcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    | |||| |||||||||||||||| || ||| |||||    
T  6764324 accatgcagctatcacaaacctcacgcccttcgaac 6764359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 30685800 - 30685882
Alignment:
Q  149 cccaacacccaagctgagccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    |||||||||||||||||||||| |||| | |||||||||||  |||||||||| |||||||||||||||||||||||||||||    
T  30685800 cccaacacccaagctgagccacatatcaaggagcacctaaccaaaggatcatgcagctatcacaaacctcgcgacctccgaac 30685882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 6804806 - 6804745
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 129  Q
    ||||| ||||| || ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  6804806 agcactgtaaatacagtatccaccaccgcccatcgtcactcctcacccacaaagaacaccct 6804745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 46814288 - 46814385
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctacaaataaaactcccaaaccccaacacccaagctgagccac 170  Q
    |||||||| |||||||| |||||||||||||||||||||||  |||| |||| ||||  |||||||||||||| ||  ||||||||| || |||||||    
T  46814288 gtaaacacagtatccacaaccgtccatcgtcactactcacctccaaataacacccctcgaaataaaactcccatacttcaacacccacgccgagccac 46814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 30685745 - 30685797
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacac 126  Q
    |||||||||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  30685745 gtaaacacggtatccaccaccgcccatcttcactacacacccacaaagaacac 30685797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 7857890 - 7857816
Alignment:
Q  97 ccatcgtcactactcacccacaaagaacaccctacaaa-taaaactcccaaaccccaacacccaagctgagccac 170  Q
    |||||| |||||||||||| || |||||||||  |||| ||||||||||| ||  |||||||||| |||||||||    
T  7857890 ccatcgccactactcacccccatagaacacccctcaaaataaaactcccagacttcaacacccaaactgagccac 7857816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 24684312 - 24684350
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactca 112  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  24684312 gtaaacacgatatccaccaccgcccatcgtcactactca 24684350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 24684372 - 24684453
Alignment:
Q  147 accccaacacccaagctgagccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    ||||| ||| ||||| |||||||| | ||||||||||||| || ||||||||||| | ||  ||| |||||||||||||||||    
T  24684372 accccgacatccaagttgagccacatttcgaagagcacctgaccgaaggatcatgcatcttccac-aacctcgcgacctccga 24684453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 31584858 - 31584894
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactact 110  Q
    ||||||||||||||||||||||  |||||||||||||    
T  31584858 gtaaacacggtatccaccaccgctcatcgtcactact 31584894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 18593509 - 18593346
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |||||    
T  18593509 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacatcctccaaataaaactcccagaccccaacacccaagttgagc 18593410  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    ||| | ||||||| |||||||| ||||||||||| | |||||||||| ||||||||||||||||    
T  18593409 cacatttcgaagaacacctaaccgaaggatcatgcacctatcacaaatctcgcgacctccgaac 18593346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 34378358 - 34378204
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||| |     
T  34378358 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagccacatt 34378259  T
Q  174 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccg 228  Q
     ||||||||| ||||| |||||||||   | ||||||||||||||||||||||||    
T  34378258 acgaagagcatctaaccgaaggatcaaacaactatcacaaacctcgcgacctccg 34378204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 81 - 231
Target Start/End: Complemental strand, 698614 - 698464
Alignment:
Q  81 cggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcgaaga 180  Q
    |||||||||||| || | ||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||| | || ||||    
T  698614 cggtatccaccatcgccgatcgtcactactcacccacaaagaacaccctccaaataaaactctcagaccccaacacccaagctgagccacatttcaaaga 698515  T
Q  181 gcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    ||||||||| ||||||| ||| |||||||||||||||||| ||||| ||||    
T  698514 gcacctaaccgaaggattatgcagctatcacaaacctcgcaacctctgaac 698464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 68 - 206
Target Start/End: Original strand, 7161831 - 7161969
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| ||||||||| | |||||||||  ||| ||||||||||||||| ||||||||||| |  |||||||||||||| |||||||||| ||||||||||    
T  7161831 agcactgtaaacacgatttccaccaccacccaacgtcactactcacccccaaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagc 7161930  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagct 206  Q
    ||| ||||||||| ||||| ||  |||||||||| ||||    
T  7161931 cacatatcgaagaacacctgaccaaaggatcatgcagct 7161969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 225
Target Start/End: Original strand, 18313460 - 18313614
Alignment:
Q  70 caccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagcca 169  Q
    ||||||||||||| |||||| ||||   |||||||||||||||||||  |||||||||||| | | |||||||| ||| || || |||||| || |||||    
T  18313460 caccgtaaacacgatatccatcaccactcatcgtcactactcacccatgaagaacaccctaaaga-aaaactccaaaatcctaaaacccaaactaagcca 18313558  T
Q  170 cgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacct 225  Q
    | | |||||||||||||||  ||| ||||||| |||||||||||||||||||||||    
T  18313559 catttcgaagagcacctaaacgaatgatcatgcagctatcacaaacctcgcgacct 18313614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 29087745 - 29087587
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||  |||||| |||||  ||||||| |||||| ||||||||| | ||| |||||    
T  29087745 agcactgtaaacacggtattcaccaccgcccatcgtcactactcacccctaaagaa-accctcaaaataaagctcccagaccccaacatctaagttgagc 29087647  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    ||| || |||||||||||| ||  |||||||||| ||||| ||  |||||||||||||||||    
T  29087646 cacata-cgaagagcacctgaccaaaggatcatggagctacca-taacctcgcgacctccga 29087587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 20138693 - 20138531
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct-acaaataaaactcccaaaccccaacacccaagctgag 166  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||| | |    
T  20138693 agcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacccaagccggg 20138594  T
Q  167 ccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
     ||| | |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  20138593 tcacatttcgaagagcacctaaccgaaggatcatgcagctatcacaaacctcgcgacctccga 20138531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 68 - 229
Target Start/End: Original strand, 31207177 - 31207338
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| |||||||| |||||||||| || |||||||||||||||||||||||||||||||||  |||||||||||||| || ||||||||||||||||||    
T  31207177 agcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccatactccaacacccaagctgagc 31207276  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    ||| | |||||||||||||||| ||||| ||||  |||||||||||||||||||||||||||    
T  31207277 cacatttcgaagagcacctaaccgaagggtcattcagctatcacaaacctcgcgacctccga 31207338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 37986679 - 37986836
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 173  Q
    |||||||||||||| ||||||  ||||||||| ||||||||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||||| |     
T  37986679 gtaaacacggtatctaccaccacccatcgtcattactcacccacaaagaacaccctccaaataaaactcccagaccgaaacacccaagctgagccacatt 37986778  T
Q  174 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    |||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||    
T  37986779 tcgaagagcacctaaccgaaggatcaggcagctatcacaaacctcgcgacctccgaac 37986836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 74 - 226
Target Start/End: Original strand, 24995215 - 24995368
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaacccc-aacacccaagctgagccacgt 172  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||||||| | ||||| ||||||||||||||||||  |    
T  24995215 gtaaacacggtatccaccaccgcccatcgtcactactcacgcacaaagaacaccctcaaaataaaactcctagacccccaacacccaagctgagccatat 24995314  T
Q  173 atcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctc 226  Q
     |||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  24995315 ttcgaagagcacctaaccgaaggatcatgcagctatcacaaacctcgcgacctc 24995368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 9519760 - 9519604
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactccca-aaccccaacacccaagctgagccacgt 172  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||| || | ||||||||||||||||||||||  |    
T  9519760 gtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagctgagccatat 9519661  T
Q  173 atcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
     |||||||||||||||| ||| ||||||| ||||||||||||| |||| ||||||||    
T  9519660 ttcgaagagcacctaaccgaatgatcatgcagctatcacaaacttcgcaacctccga 9519604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 76 - 231
Target Start/End: Original strand, 12898098 - 12898252
Alignment:
Q  76 aaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatc 175  Q
    ||||| || |||||| ||||| ||||||||||||||||||||||||||||||||  |||||||||||  | |||||||||||||||||||||||| | ||    
T  12898098 aaacatggaatccacaaccgttcatcgtcactactcacccacaaagaacaccctcaaaataaaactctaagaccccaacacccaagctgagccacatttc 12898197  T
Q  176 gaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    |||||||||||||| ||||||||| | |||||||||||||||||||||||||||||    
T  12898198 gaagagcacctaaccgaaggatca-gcagctatcacaaacctcgcgacctccgaac 12898252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 74 - 226
Target Start/End: Original strand, 41893223 - 41893374
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 173  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||| |||||||| ||| |||||||||||||||||||| |     
T  41893223 gtaaacacggtatccaccaccgaccatcgtcactactcacccacaaagaacaccctgaaaatagaactcccagacctcaacacccaagctgagccacatt 41893322  T
Q  174 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctc 226  Q
    |||||||| |||| |  ||||||||||| ||||||||||||||| ||||||||    
T  41893323 tcgaagagtacct-atagaaggatcatgcagctatcacaaaccttgcgacctc 41893374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 32066119 - 32066273
Alignment:
Q  77 aacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcg 176  Q
    ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||||||| |||| | ||     
T  32066119 aacactgtatccaccaccgcccatcgtcactactcactcacaaagaacaccctccaaataaaactctcagaccccaacacccaagctgaaccacatttca 32066218  T
Q  177 aagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    ||||||| ||||| ||| ||||||| |||||||||||||||||| ||||| ||||    
T  32066219 aagagcatctaaccgaatgatcatgcagctatcacaaacctcgcaacctctgaac 32066273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 74 - 225
Target Start/End: Original strand, 34388828 - 34388977
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 173  Q
    ||||||||| |||||||||||| | |||||||||||||||||||||||||||||||  ||||||||||| || |||||||||||||||||||||||| |     
T  34388828 gtaaacacg-tatccaccaccgcctatcgtcactactcacccacaaagaacaccctcaaaataaaactctcataccccaacacccaagctgagccacatg 34388926  T
Q  174 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacct 225  Q
      ||||| ||||||||||||||||||  ||||||||||||||||| ||||||    
T  34388927 atgaagaacacctaactgaaggatca-ctagctatcacaaacctcacgacct 34388977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 22773699 - 22773606
Alignment:
Q  134 ataaaactcccaaaccccaacacccaagctgagccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctcc 227  Q
    |||||||||||| |||||||||||||| ||||||||| | |||||||||||||||| |||||||||||||| |||||||||||||| |||||||    
T  22773699 ataaaactcccagaccccaacacccaaactgagccacatttcgaagagcacctaacagaaggatcatgtagatatcacaaacctcgtgacctcc 22773606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 16457290 - 16457368
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaa 146  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||    
T  16457290 agcactgtaaacacggtatccaccaccgtccatcgtcactactcacccataaagaccaccctgaaaataaaactcccaa 16457368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 22773875 - 22773820
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 129  Q
    ||||||| |||| ||||||| | |||||||||||||||||||||||||||||||||    
T  22773875 gtaaacatggtaaccaccactgcccatcgtcactactcacccacaaagaacaccct 22773820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 16457364 - 16457439
Alignment:
Q  156 cccaagctgagccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    ||||||||||||||| | || |||||||||||||   | ||||||| |||||||||||||||| |||| |||||||    
T  16457364 cccaagctgagccacatttcaaagagcacctaaccacaagatcatgcagctatcacaaacctcacgacatccgaac 16457439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 36631084 - 36630943
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 173  Q
    |||||||||||||||||||||| ||||||| ||||||||||| ||||              |||||| | || ||||| ||| ||||| |||||||| |     
T  36631084 gtaaacacggtatccaccaccgcccatcgtaactactcacccccaaac-------------taaaacacgcagacccccacatccaagttgagccacatt 36630998  T
Q  174 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    ||||||||||||| || ||||||||||| ||||  ||| |||||||||||||||||    
T  36630997 tcgaagagcacctgaccgaaggatcatgcagctcccac-aacctcgcgacctccga 36630943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 35821506 - 35821432
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactc 142  Q
    ||||| |||||||| ||||| | ||||| ||||| |||||||||| || |||||||||||||  |||||||||||    
T  35821506 agcactgtaaacacagtatctagcaccgcccatcatcactactcatcctcaaagaacacccttaaaataaaactc 35821432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 38577610 - 38577681
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctac-aaataaaactccc 144  Q
    |||||||| |||||||| | | ||||||||||||||||| || |||||||||| | || |||||||||||||    
T  38577610 gtaaacacagtatccacaatcatccatcgtcactactcatccccaaagaacactccacaaaataaaactccc 38577681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 35816067 - 35816121
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccc 128  Q
    |||||||| |||||||| |||  ||||| ||||||||||||| ||||||||||||    
T  35816067 gtaaacacagtatccacaaccacccatcatcactactcacccccaaagaacaccc 35816121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 5860112 - 5860266
Alignment:
Q  77 aacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcg 176  Q
    |||||||||| |||||  | |||||||||||||||| ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||| | |||    
T  5860112 aacacggtattcaccattgcccatcgtcactactcatccacaaagaacaccctgaaaataaaactcccagaccccaacacccaagctgagccacatttcg 5860211  T
Q  177 aagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5860212 aagagcacctaactgaaggatcatgcagctatcacaaacctcgcgacctccgaac 5860266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 68 - 229
Target Start/End: Original strand, 44353378 - 44353540
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct-acaaataaaactcccaaaccccaacacccaagctgag 166  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||| | |    
T  44353378 agcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacccaagccggg 44353477  T
Q  167 ccacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
     ||| | |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  44353478 tcacatttcgaagagcacctaaccgaaggatcatgcagctatcacaaacctcgcgacctccga 44353540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 68 - 229
Target Start/End: Original strand, 47325700 - 47325861
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  47325700 agcactgtaaacacagtatccatcatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccagaccccaacacccaagctgagc 47325799  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    ||| | |||||||||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  47325800 cacatttcgaagagcacctaaccgaaggatcattcagctatcacaaacctcgcgacctccga 47325861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 37795255 - 37795092
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| |||||||||||||||||||||| ||||| | |||||| | ||||||||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  37795255 agcactgtaaacacggtatccaccaccgcccatcattactacttaaccacaaagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagc 37795156  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    |||   |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  37795155 cacagttcgaagagcacctaaccgaaggatcatgcagctatcacaaacctcgcgacctccgaac 37795092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 38306517 - 38306364
Alignment:
Q  78 acacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcga 177  Q
    ||||| |||||||||||  |||||||||||||||||| ||||||||||||||  ||||||||||| || |||||||||||||||||||||||| ||||||    
T  38306517 acacgatatccaccaccacccatcgtcactactcacctacaaagaacaccctcaaaataaaactcacagaccccaacacccaagctgagccacatatcga 38306418  T
Q  178 agagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||    
T  38306417 agagcacttaaccgaaggatcatgcagctatcacaaacctcgcgacctccgaac 38306364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 31971949 - 31972082
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  31971949 agcactgtaaacacggtatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaactcccagaccccaacacccaagctgagc 31972048  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatg 201  Q
    ||| | |||||||||||||||| |||||||||||    
T  31972049 cacatttcgaagagcacctaaccgaaggatcatg 31972082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 10244448 - 10244285
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||| ||| ||||| ||||| |||| ||||||||||||||||    
T  10244448 agcaccgtaaacatggtatccaccatcgcccatcgtcactactcacccacaaagaccaccctccaactaaaaatcccagacccaaacacccaagctgagc 10244349  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    |||   || ||||||||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  10244348 cacaattcaaagagcacctaaccgaaggatcatgcaactatcacaaacctcgcgacctccgaac 10244285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 74 - 226
Target Start/End: Original strand, 3419476 - 3419628
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 173  Q
    ||||||| | ||||||||||||| |||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||| | ||||||       
T  3419476 gtaaacatgatatccaccaccgttcatcgtcactactcactcacaaagaacacccttaaaataaaactcccaaaccccaacacccaagttaagccacaat 3419575  T
Q  174 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctc 226  Q
    |||||| ||||||||| ||||||||| | ||||||||||||||| | ||||||    
T  3419576 tcgaagcgcacctaaccgaaggatcaagcagctatcacaaaccttgtgacctc 3419628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 3867376 - 3867249
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 173  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||  |||||||||| ||| || ||||||||||||||||||||| ||    
T  3867376 gtaaacacgatatccaccaccgtccatcgtcactactcacccccaaagaacaccctcaaaataaaacttccatactccaacacccaagctgagccacata 3867277  T
Q  174 tcgaagagcacctaactgaaggatcatg 201  Q
    ||||||||||||| ||  ||||||||||    
T  3867276 tcgaagagcacctgaccaaaggatcatg 3867249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 227
Target Start/End: Complemental strand, 25161071 - 25160920
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 173  Q
    |||||||  |||||||||| || ||||||||||||||||||||||||||||||| |  |||  |||||| || ||||||||| | ||| |||||||| |     
T  25161071 gtaaacatagtatccaccaacgcccatcgtcactactcacccacaaagaacacctttaaaa--aaactctcagaccccaacatctaagttgagccacatt 25160974  T
Q  174 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctcc 227  Q
    || |||||||||||||||||||||||   ||||||||||||||| | |||||||    
T  25160973 tccaagagcacctaactgaaggatcacacagctatcacaaaccttgagacctcc 25160920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 33435337 - 33435215
Alignment:
Q  106 ctactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcgaagagcacctaactgaaggatcatgtagc 205  Q
    |||||||||| |||||||||||||  ||| ||||||| || ||| ||||| ||||||||||||||   ||||||||||||| || |||||||||||||||    
T  33435337 ctactcacccccaaagaacaccctcaaaagaaaactctcagacctcaacaaccaagctgagccacaattcgaagagcacctgaccgaaggatcatgtagc 33435238  T
Q  206 tatcacaaacctcgcgacctccga 229  Q
    | |||| |||||||||||||||||    
T  33435237 tttcac-aacctcgcgacctccga 33435215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 3419217 - 3419313
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccac 170  Q
    ||||||| | ||||||||||||| |||| ||||||||||| |||||| ||||||||  |||||||||||||||||||||||||||||| | ||||||    
T  3419217 gtaaacatgatatccaccaccgttcatcatcactactcactcacaaaaaacacccttaaaataaaactcccaaaccccaacacccaagttaagccac 3419313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 41089570 - 41089723
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgta 173  Q
    |||||||| ||||| ||||||| |||| ||||||| | |||| |||||||||||||  |||||||||||||| |||| ||||||||   ||||| ||       
T  41089570 gtaaacacagtatctaccaccgcccattgtcactatt-acccgcaaagaacaccctcaaaataaaactcccagaccctaacacccatcttgagctacact 41089668  T
Q  174 tcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    ||||||||||||| |  |||| |||||| ||||  ||| |||||||||||||||||    
T  41089669 tcgaagagcacctcaacgaagaatcatgcagcttccac-aacctcgcgacctccga 41089723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 40726320 - 40726392
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaact 141  Q
    ||||| |||||||||||||||||||||| | ||| |||||||||| ||||||||||||||||  ||||||||||    
T  40726320 agcacggtaaacacggtatccaccaccgcctatcatcactactca-ccacaaagaacaccctcaaaataaaact 40726392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 34390199 - 34390125
Alignment:
Q  97 ccatcgtcactactcacccacaaagaaca-ccctacaaataaaactcccaaaccccaacacccaagctgagccac 170  Q
    |||||||||||||||| || ||||||||| ||||  |||||||||||||| ||  ||||||||||| ||||||||    
T  34390199 ccatcgtcactactcatccccaaagaacacccctcaaaataaaactcccagactacaacacccaagttgagccac 34390125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 6585140 - 6585045
Alignment:
Q  76 aaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaa-taaaactcccaaaccccaacacccaagctgagccac 170  Q
    |||||| |||||||| |||   |||||||||||||||||  |||| | |||||  |||| ||||||||||| ||  ||||||||||||||||||||    
T  6585140 aaacacagtatccacaaccactcatcgtcactactcacctccaaatagcacccctcaaaataaaactcccagacttcaacacccaagctgagccac 6585045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 5972 - 5811
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||||||||||| |||||||||||||  ||||| |||||||||||||||||| ||||||||  |||||||||||||| | |||||||||||||||||||    
T  5972 agcaccgtaaacatggtatccaccacctcccatcatcactactcacccacaaaaaacaccctcaaaataaaactcccagatcccaacacccaagctgagc 5873  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    ||| |  ||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  5872 cacattacgaagagcacctaaccgaaggatcaagtagctatcacaaaccttgcgacctccga 5811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 3117759 - 3117596
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| |||||||||||| |||||||||  ||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  3117759 agcactgtaaacacggtaaccaccaccgctcatcgtctctacttacccacaaagaacaccctataaataaaactcccagaccccaacacccaagttgagc 3117660  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    ||| | ||||||||||| |||  ||||||||||| | |||||||||||||||||||||||||||    
T  3117659 cacatttcgaagagcacataatcgaaggatcatgcaactatcacaaacctcgcgacctccgaac 3117596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 10542091 - 10541967
Alignment:
Q  75 taaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtat 174  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||||||||| | |    
T  10542091 taaatacggtatccaccaccgcccatcgtcactactcacccacaaagaataccctccaaataaaacttccagaccccaacacccaagctgagccacattt 10541992  T
Q  175 cgaagagcacctaactgaaggatca 199  Q
    ||||||||||||||| |||||||||    
T  10541991 cgaagagcacctaaccgaaggatca 10541967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 14663343 - 14663222
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| ||||||||  |||||||||||| ||||||||||||||||||| ||||||||| |||  |||||||||||||||||||||||| |||||| ||||    
T  14663343 agcactgtaaacacaatatccaccaccgcccatcgtcactactcacccgcaaagaacatcctcaaaataaaactcccaaaccccaacatccaagccgagc 14663244  T
Q  168 cacgtatcgaagagcacctaac 189  Q
    ||| | ||||||| || |||||    
T  14663243 cacatttcgaagaacatctaac 14663222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 8255293 - 8255132
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| |||||||| |||||||||||   |||||||||||||||||||||||||||||||||  ||||||||||| || |||| ||||||||||||||||    
T  8255293 agcactgtaaacacagtatccaccacatcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacccaagctgagc 8255194  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    ||| |  |||||||||||||||||| |||||| | |||||||||||||||||||||||||||    
T  8255193 cacattacgaagagcacctaactgatggatcaagcagctatcacaaacctcgcgacctccga 8255132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 8268711 - 8268550
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| |||||||| |||||||||||   |||||||||||||||||||||||||||||||||  ||||||||||| || |||| ||||||||||||||||    
T  8268711 agcactgtaaacacagtatccaccacatcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacccaagctgagc 8268612  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    ||| |  |||||||||||||||||| |||||| | |||||||||||||||||||||||||||    
T  8268611 cacattacgaagagcacctaactgatggatcaagcagctatcacaaacctcgcgacctccga 8268550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 68 - 228
Target Start/End: Original strand, 30167380 - 30167539
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| |||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||  |||||||||||||| ||||||||||||||| || ||    
T  30167380 agcactgtaaacacggtatccaccaccg-ccaacgtcaccactcacccacaaagaacaccctcaaaataaaactcccataccccaacacccaagttgggc 30167478  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccg 228  Q
    ||| | ||||||||| | |||| ||||| ||||| |||||||| |||||||||||||||||    
T  30167479 cacatttcgaagagcgcttaaccgaagggtcatgcagctatcataaacctcgcgacctccg 30167539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 69 - 231
Target Start/End: Complemental strand, 30964702 - 30964544
Alignment:
Q  69 gcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagcc 168  Q
    |||| ||||| ||| ||| |||||||| ||||| |||||||||||||||||||||||||||  ||||||||||||||   ||    |||||||| | |||    
T  30964702 gcactgtaaatacgatattcaccaccgcccatcatcactactcacccacaaagaacaccctcaaaataaaactcccagtacc----acccaagcagggcc 30964607  T
Q  169 acgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccgaac 231  Q
    || | |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||    
T  30964606 acatttcgaagagcacctaaccgaatgatcatgcagctatcacaaacctcgcgacctccgaac 30964544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 4305951 - 4305833
Alignment:
Q  107 tactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcgaagagcacctaactgaaggatcatgtagct 206  Q
    |||||||||||||||| ||||||  ||||||||||||||||||| || ||||||| |||||||| | ||||||||||||| || ||||||||||| || |    
T  4305951 tactcacccacaaagatcaccctgaaaataaaactcccaaacccaaatacccaagttgagccacat-tcgaagagcacctcaccgaaggatcatgcagtt 4305853  T
Q  207 atcacaaacctcgcgacctc 226  Q
    ||||||||||| ||||||||    
T  4305852 atcacaaaccttgcgacctc 4305833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 8705959 - 8706061
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| |||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||  |||||||||||  | |||||||||||||||||||||    
T  8705959 agcactgtaaacacagtatccaccactgcccatcgtcactacccacccacaaagaacaccctcaaaataaaactcttagaccccaacacccaagctgagc 8706058  T
Q  168 cac 170  Q
    |||    
T  8706059 cac 8706061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 20464850 - 20464786
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaa 138  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||  |||||||    
T  20464850 gtaaacacggtatccaccaccgcccatcgtcactactcacccccaaataacaccctcaaaataaa 20464786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 229
Target Start/End: Original strand, 31050493 - 31050636
Alignment:
Q  85 atccaccaccgtccatcgtcactactcacccacaaagaaca-ccctacaaataaaactcccaaaccccaacacccaagctgagccacgtatcgaagagca 183  Q
    |||||||| | |||||||||||||||||||| ||| ||||| ||||  |||||||||  ||| ||  ||||||||||||| ||||||  |||||| |||     
T  31050493 atccaccatcatccatcgtcactactcacccccaaggaacacccctcaaaataaaacagccagacttcaacacccaagcttagccac-aatcgaaaagct 31050591  T
Q  184 cctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    |||||| ||| || |||| ||||  ||| |||||| ||||||||||    
T  31050592 cctaaccgaatgaacatgcagcttccac-aacctctcgacctccga 31050636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 2826019 - 2825946
Alignment:
Q  97 ccatcgtcactactcacccacaaagaacaccctacaaa-taaaactcccaaaccccaacacccaagctgagccac 170  Q
    ||||||||||||||||||| || |||||||||  |||| ||||||||||||||  |||||||||| |||| ||||    
T  2826019 ccatcgtcactactcaccc-cagagaacacccctcaaaataaaactcccaaacttcaacacccaaactgaaccac 2825946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 35341161 - 35341256
Alignment:
Q  74 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctacaaataaaactcccaaaccccaacacccaagctgagccac 170  Q
    |||||||| |||||| | |||  ||||||||||||||||||| || |||||| ||||  |||||||||||||||||  ||||| |||| |||||||||    
T  35341161 gtaaacacagtatccgcaaccacccatcgtcactactcaccc-cagagaacacccctcaaaataaaactcccaaacttcaaca-ccaaactgagccac 35341256  T

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Target: scaffold0068 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 229
Target Start/End: Original strand, 35590 - 35748
Alignment:
Q  68 agcaccgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctacaaataaaactcccaaaccccaacacccaagctgagc 167  Q
    ||||| |||||||| ||||||||||| | |||||||||| |||||||  | |||||||| ||| |||  ||||||||| |||||||||||||||||||||    
T  35590 agcactgtaaacacagtatccaccactgcccatcgtcac-actcacctgctaagaacactctaaaaa--aaactcccacaccccaacacccaagctgagc 35686  T
Q  168 cacgtatcgaagagcacctaactgaaggatcatgtagctatcacaaacctcgcgacctccga 229  Q
    | | | |||||||||||||||| || |||||||| |||||||||||| |||| |||||||||    
T  35687 ctcatttcgaagagcacctaaccgatggatcatgcagctatcacaaatctcgtgacctccga 35748  T

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