View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6711_low_27 (Length: 218)

Name: NF6711_low_27
Description: NF6711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6711_low_27
NF6711_low_27
[»] chr4 (5 HSPs)
chr4 (2-218)||(36388205-36388421)
chr4 (89-121)||(36388194-36388226)
chr4 (89-121)||(36412230-36412262)
chr4 (89-121)||(36417561-36417593)
chr4 (89-121)||(36426389-36426421)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 36388421 - 36388205
Alignment:
Q  2 cacaaaaagaatagctgacactaaacaaactaatatatgacactttctttaagtcagaatgattgcaactagtaattaatataaagaacaattgcaatta 101  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36388421 cacaaaaagaatagctgacattaaacaaactaatatatgacactttctttaagtcagaatgattgcaactagtaattaatataaagaacaattgcaatta 36388322  T
Q  102 tagaagctacaagaattgcaattttatcctaaaaaataaatcacataccctcccnnnnnnncttccacatttagttcacccaggagaggaggaggccaat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||| |||||||| ||||||||||||||| ||||    
T  36388321 tagaagctacaagaattgcaattttatcctaaaaaataaatcacataccctccctttttttcttccacatgtagttcacacaggagaggaggaggacaat 36388222  T
Q  202 tgcaattatagaagcta 218  Q
    |||||||||||||||||    
T  36388221 tgcaattatagaagcta 36388205  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 36388226 - 36388194
Alignment:
Q  89 acaattgcaattatagaagctacaagaattgca 121  Q
    |||||||||||||||||||||||||||||||||    
T  36388226 acaattgcaattatagaagctacaagaattgca 36388194  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 36412262 - 36412230
Alignment:
Q  89 acaattgcaattatagaagctacaagaattgca 121  Q
    |||||||||| ||||||||||||||||||||||    
T  36412262 acaattgcaactatagaagctacaagaattgca 36412230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 36417593 - 36417561
Alignment:
Q  89 acaattgcaattatagaagctacaagaattgca 121  Q
    |||||||||| ||||||||||||||||||||||    
T  36417593 acaattgcaactatagaagctacaagaattgca 36417561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 36426421 - 36426389
Alignment:
Q  89 acaattgcaattatagaagctacaagaattgca 121  Q
    |||||||||| ||||||||||||||||||||||    
T  36426421 acaattgcaactatagaagctacaagaattgca 36426389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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