View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6711_low_3 (Length: 533)
Name: NF6711_low_3
Description: NF6711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6711_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 129 - 525
Target Start/End: Original strand, 31658583 - 31658979
Alignment:
| Q |
129 |
ccaatgccaaactttgaaaataaatttacacttagacagaaacatatccatagccatcaaaatcctaactggtcataaacattctcaaattcaaatgatt |
228 |
Q |
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| T |
31658583 |
ccaatgccaaactttgaaaataaatttacacttagacagaaacatatccatagccatcaaaatcctaactggtcataaacattctcaaattcaaatgatt |
31658682 |
T |
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| Q |
229 |
caatcgatgatagcatagtggcatgtctcaaataatcaaaacaaaattcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaaga |
328 |
Q |
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| T |
31658683 |
caatcgatgatagcatagtggcacgtctcaaataatcaaaataaacttcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaaga |
31658782 |
T |
|
| Q |
329 |
ataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgttg |
428 |
Q |
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| T |
31658783 |
ataatcatcatgaatctcttccttaggatcctcttttgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgttg |
31658882 |
T |
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| Q |
429 |
ttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatgtccat |
525 |
Q |
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| T |
31658883 |
ttatcaaaactaagtaatatagaagagtcatttgatgacaaaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatggccat |
31658979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 458
Target Start/End: Complemental strand, 31650553 - 31650298
Alignment:
| Q |
209 |
attctcaaattcaaatgattcaatcgatgatagcatagtggcatgtctcaaataatcaaaacaaaattcaaagttacatgatatgaggttatctgatgag |
308 |
Q |
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| T |
31650553 |
attctcaaattaaaaagattcactcgatgatgactcactgacatgtctcaaataatcaaaataaacatcaaaatcgcataattggagattctccggtgag |
31650454 |
T |
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| Q |
309 |
aacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaat---ggtgatggtggaaacgagt |
405 |
Q |
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| T |
31650453 |
aacaattggttttgaggaaaatgatcatgatgtatctcttccttgggatctccttttgtagatgcaagaagtggcaatggtggtgatggtcgaaatggat |
31650354 |
T |
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| Q |
406 |
tttcttctttaattggaatgttg---ttatcaaaactgagtaatatagaagagtca |
458 |
Q |
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| T |
31650353 |
attcttgtttatttgaaatgttgttattatcgaaactaagtaatattgaagagtca |
31650298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 31657342 - 31657244
Alignment:
| Q |
422 |
aatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatg |
520 |
Q |
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|||||||||||| ||||| ||||||||||||||||||| | ||| |||||||||||| ||||| |||||||| || | ||||||||||||||||| |
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| T |
31657342 |
aatgttgttatcgaaactaagtaatatagaagagtcatcgtagcacaaaatggattccaattttatgtctgaatggtaagagcttttgcaagtgtgatg |
31657244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 31657434 - 31657390
Alignment:
| Q |
342 |
atctcttccttaggatcctctattgtagatgcaagaaatggcaat |
386 |
Q |
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| T |
31657434 |
atctcttccttgggttcctcttttgtagatgcaagaagtggcaat |
31657390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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