View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6711_low_4 (Length: 517)

Name: NF6711_low_4
Description: NF6711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6711_low_4
NF6711_low_4
[»] chr8 (6 HSPs)
chr8 (12-496)||(28187081-28187565)
chr8 (258-496)||(14720339-14720578)
chr8 (11-186)||(14720591-14720766)
chr8 (204-426)||(19216890-19217112)
chr8 (316-381)||(12114273-12114338)
chr8 (204-424)||(18924073-18924293)
[»] chr3 (1 HSPs)
chr3 (12-475)||(7572684-7573147)
[»] chr7 (2 HSPs)
chr7 (223-426)||(10009964-10010167)
chr7 (24-68)||(8787872-8787916)
[»] chr2 (1 HSPs)
chr2 (204-355)||(22562032-22562183)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 496
Target Start/End: Original strand, 28187081 - 28187565
Alignment:
Q  12 acatcattcttcacaatctccaagtaagtttgggaaaaaactgcaccaaaaccatctggaccaggtgcaccatccttgttcattgctagcacatcatgat 111  Q
    |||||||| |||||||| ||| ||||| ||||| ||||||| |||||||||||||||||||  || || || ||||| ||||||||||||||| | ||||    
T  28187081 acatcatttttcacaatgtcccagtaattttggaaaaaaaccgcaccaaaaccatctggactgggggctccctccttattcattgctagcacaacttgat 28187180  T
Q  112 gaatctcagttggagtaggaagcctggtcaagagattgttcacatcatctgtaatgagagaaggaataaagtcatatatcaattgattagcttgcaaatc 211  Q
    | ||||| | || ||||||||| || || |  |||||||||||||| || |||||||||  ||||||  |||| | ||||| ||||||| | ||||||||    
T  28187181 ggatctctgatgcagtaggaagtcttgttagaagattgttcacatcttcagtaatgagattaggaatggagtcttctatcagttgattaacctgcaaatc 28187280  T
Q  212 ctgcacaacattgttagtagcaaaaatatttttaaagtgatttgtgatgagacttgatatttgatccgggtcataaaccatatcatcaccattcatgagg 311  Q
    ||||||||||||||||||| ||||||||||||||||||| || || ||||||||||||||||  || ||||  |||||||||||||||||||||||||||    
T  28187281 ctgcacaacattgttagtaacaaaaatatttttaaagtggttagtaatgagacttgatatttcctcagggttgtaaaccatatcatcaccattcatgagg 28187380  T
Q  312 gtagttatgagtttggaggtatttttgattttggttagtctgtggtaatatttggtatttctgactccatttgaatgccaagcaagtttagatttctctc 411  Q
    ||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| || ||  |||||||| |||||||||||| |||||||||||| |    
T  28187381 gtagttacgagtttggaggtgtttttgattttggttagtctatggtaatatttggtgttcctatctccatttaaatgccaagcaactttagatttctccc 28187480  T
Q  412 tccaataatcttcttatattagcaaagcattttcaagttgaaattaagcatctttgtgttgttccaaaagagagttagtgatacc 496  Q
    ||||||| ||||||| |||| | |||||||||||||||||||| |  |||||| ||||||||||||| || |||| |||||||||    
T  28187481 tccaatattcttcttctatttgtaaagcattttcaagttgaaactgcgcatctctgtgttgttccaatagggagtcagtgatacc 28187565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 258 - 496
Target Start/End: Complemental strand, 14720578 - 14720339
Alignment:
Q  258 atgagacttgatatttgatccgggtcataaaccatatcatcaccattcatgagggtagttatgagtttggaggtatttttg-attttggttagtctgtgg 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||    
T  14720578 atgagacttgatatttgatccgggtcataaaccatatcatcaccattcatgagggtagttatgagtttggaggtatttttttattttggttagtctatgg 14720479  T
Q  357 taatatttggtatttctgactccatttgaatgccaagcaagtttagatttctctctccaataatcttcttatattagcaaagcattttcaagttgaaatt 456  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14720478 taatatttggtatttctgtctccatttgaataccaagcaactttagatttctctctccaataatcttcttatattagcaaagcattttcaagttgaaatt 14720379  T
Q  457 aagcatctttgtgttgttccaaaagagagttagtgatacc 496  Q
     |||||||||||||||||||||||||||||||||||||||    
T  14720378 gagcatctttgtgttgttccaaaagagagttagtgatacc 14720339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 14720766 - 14720591
Alignment:
Q  11 gacatcattcttcacaatctccaagtaagtttgggaaaaaactgcaccaaaaccatctggaccaggtgcaccatccttgttcattgctagcacatcatga 110  Q
    |||||||||||||||||||||| |||||||||||||||||  ||||||| ||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  14720766 gacatcattcttcacaatctcccagtaagtttgggaaaaacttgcaccataaccatctggaccagatgcgccatccttgttcattgctagcatatcatga 14720667  T
Q  111 tgaatctcagttggagtaggaagcctggtcaagagattgttcacatcatctgtaatgagagaaggaataaagtcat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14720666 tgaatctcagttggagtaggaagcctggtcaagagattgttcacatcatctgtaatgagagaaggaataaagtcat 14720591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 204 - 426
Target Start/End: Original strand, 19216890 - 19217112
Alignment:
Q  204 tgcaaatcctgcacaacattgttagtagcaaaaatatttttaaagtgatttgtgatgagacttgatatttgatccgggtcataaaccatatcatcaccat 303  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||  |||||||||  |||||| ||||||||||    
T  19216890 tgcaattcctgcacaacattgttagtggaaaaaatatttttaaagtgatttgtaatgagacttgatatttcctccgggtcagtaaccatgtcatcaccat 19216989  T
Q  304 tcatgagggtagttatgagtttggaggtatttttgattttggttagtctgtggtaatatttggtatttctgactccatttgaatgccaagcaagtttaga 403  Q
    |||||||| |  | |||||||| || |  ||| ||||||||| |||||| ||| || | ||||| |||||  | |||| | | |||||||||  ||| ||    
T  19216990 tcatgaggctgttaatgagtttagaagagtttctgattttggatagtctatggaaaaacttggtgtttctatcaccatctaagtgccaagcacatttgga 19217089  T
Q  404 tttctctctccaataatcttctt 426  Q
    ||| || ||||| || |||||||    
T  19217090 tttttccctccagtattcttctt 19217112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 12114338 - 12114273
Alignment:
Q  316 ttatgagtttggaggtatttttgattttggttagtctgtggtaatatttggtatttctgactccat 381  Q
    |||||||||||||||| | |||  ||||||||||||||||| |||||||||| |||||| ||||||    
T  12114338 ttatgagtttggaggtgtgtttttttttggttagtctgtggaaatatttggtgtttctgtctccat 12114273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 424
Target Start/End: Original strand, 18924073 - 18924293
Alignment:
Q  204 tgcaaatcctgcacaacattgttagtagcaaaaatatttttaaagtgatttgtgatgagacttgatatttgatccgggtcataaaccatatcatcaccat 303  Q
    |||||||||||||||  |   ||||| | |||||||||||| ||||| ||||| ||| |||||||||||  ||  || |||  || ||| | ||| ||||    
T  18924073 tgcaaatcctgcacagaaaaattagttgaaaaaatatttttgaagtggtttgtaatgtgacttgatattaaatttggctcagtaatcatgttatccccat 18924172  T
Q  304 tcatgagggtagttatgagtttggaggtatttttgattttggttagtctgtggtaatatttggtatttctgactccatttgaatgccaagcaagtttaga 403  Q
     | | | || ||| |||||||| ||||| |||||||||||||||||||| ||| | |||   || |||||| | ||||| | ||||||||| |  |||||    
T  18924173 ccttaatggaagtgatgagtttagaggtgtttttgattttggttagtctttggaagtatcgagtgtttctgtccccattagcatgccaagctaccttaga 18924272  T
Q  404 tttctctctccaataatcttc 424  Q
    ||| ||||||||| |||||||    
T  18924273 tttttctctccaaaaatcttc 18924293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 475
Target Start/End: Complemental strand, 7573147 - 7572684
Alignment:
Q  12 acatcattcttcacaatctccaagtaagtttgggaaaaaactgcaccaaaaccatctggaccaggtgcaccatccttgttcattgctagcacatcatgat 111  Q
    |||||||| | |||||| ||| | ||| ||||| ||||||| |||||||||||||||||||| || || || ||||||||||||| ||||||| | ||||    
T  7573147 acatcattttccacaatgtcccaataactttggaaaaaaaccgcaccaaaaccatctggacctggagctccctccttgttcattgatagcacagcttgat 7573048  T
Q  112 gaatctcagttggagtaggaagcctggtcaagagattgttcacatcatctgtaatgagagaaggaataaagtcatatatcaattgattagcttgcaaatc 211  Q
    ||||||| | || ||||||||| || ||||  ||||| || ||||| || |||||||||  ||||||  |||| | |||||| |||||| | | ||||||    
T  7573047 gaatctctgatgaagtaggaagtcttgtcagtagattatttacatcttcagtaatgagattaggaatggagtcttctatcaaatgattaacctacaaatc 7572948  T
Q  212 ctgcacaacattgttagtagcaaaaatatttttaaagtgatttgtgatgagacttgatatttgatccgggtcataaaccatatcatcaccattcatgagg 311  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||  || ||||||||||| ||||||||| |||||||||||    
T  7572947 ctgcacaacattgttagtagcaaaaatatttttgaagtgatttgtaatgagacttgatatttcctcagggtcataaactatatcatcatcattcatgagg 7572848  T
Q  312 gtagttatgagtttggaggtatttttgattttggttagtctgtggtaatatttggtatttctgactccatttgaatgccaagcaagtttagatttctctc 411  Q
    |||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| |||||  |||||||| ||||||||| || |||||||||||| |    
T  7572847 gtagttatcagtttggaggtgtttttgattttggtcagtctatggtaatatttggtgtttctatctccatttaaatgccaagtaactttagatttctccc 7572748  T
Q  412 tccaataatcttcttatattagcaaagcattttcaagttgaaattaagcatctttgtgttgttc 475  Q
    ||||||| ||||||| || | | |||||||||||||||||||| |  |||||||||||||||||    
T  7572747 tccaatattcttcttctaattgtaaagcattttcaagttgaaactgcgcatctttgtgttgttc 7572684  T

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Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 223 - 426
Target Start/End: Complemental strand, 10010167 - 10009964
Alignment:
Q  223 tgttagtagcaaaaatatttttaaagtgatttgtgatgagacttgatatttgatccgggtcataaaccatatcatcaccattcatgagggtagttatgag 322  Q
    |||||| || ||||||||||||||| |||| ||||||| ||||||||||||| |  || ||| ||||||| | ||||||| |||||||| || |||||||    
T  10010167 tgttagaagaaaaaatatttttaaaatgatctgtgatgtgacttgatatttgttgtggatcagaaaccatgttatcaccaatcatgaggctatttatgag 10010068  T
Q  323 tttggaggtatttttgattttggttagtctgtggtaatatttggtatttctgactccatttgaatgccaagcaagtttagatttctctctccaataatct 422  Q
    |||||| || ||||||||||||| |||| ||||  | |||||||||||||   |||| | ||| |||||||||| ||| |||||||| |||||||| |||    
T  10010067 tttggaagtgtttttgattttggatagtttgtgaaagtatttggtatttcgatctccttctgagtgccaagcaactttggatttctccctccaatattct 10009968  T
Q  423 tctt 426  Q
    ||||    
T  10009967 tctt 10009964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 8787872 - 8787916
Alignment:
Q  24 acaatctccaagtaagtttgggaaaaaactgcaccaaaaccatct 68  Q
    ||||||||| |||| |||||| |||| ||||||||||||||||||    
T  8787872 acaatctcccagtatgtttggtaaaatactgcaccaaaaccatct 8787916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 204 - 355
Target Start/End: Complemental strand, 22562183 - 22562032
Alignment:
Q  204 tgcaaatcctgcacaacattgttagtagcaaaaatatttttaaagtgatttgtgatgagacttgatatttgatccgggtcataaaccatatcatcaccat 303  Q
    ||||||| || ||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||||  ||  | |||  || ||| | ||||||||    
T  22562183 tgcaaattcttcacaacaatgttagtagcaaaaatatttttgaagtgatttgtgatgtgacttgaaatttcctctagatcagtaatcatgttatcaccat 22562084  T
Q  304 tcatgagggtagttatgagtttggaggtatttttgattttggttagtctgtg 355  Q
    |||||||| || ||||||||||||| || |||||||||||||  ||||||||    
T  22562083 tcatgaggctatttatgagtttggatgtgtttttgattttggccagtctgtg 22562032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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