View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6713_high_1 (Length: 904)
Name: NF6713_high_1
Description: NF6713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6713_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 566 - 885
Target Start/End: Complemental strand, 6085887 - 6085568
Alignment:
| Q |
566 |
aaacatttgggagaaaaatactctaaattttgttaccctttataaacaggcattgaaattttgttccaattaatctcatctacttgcacttgcatttgct |
665 |
Q |
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| T |
6085887 |
aaacatctgggagaaaaatactctaaattttgttaccctttataaacaggcattgaaattttgttccaattaatcttatctacttgcatttacatttgct |
6085788 |
T |
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| Q |
666 |
aagtaatcagaagtatatatctaagaacaacaatgttgcattgcattacattattaataacatgaattttatttttcagtagtttattcagccgtataca |
765 |
Q |
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| T |
6085787 |
aagtaatcagaagtatatatctaagaacaacaatgttgcattgcattacattattaataacatgaattttatttttcagtagtttattcagccgtataca |
6085688 |
T |
|
| Q |
766 |
caagagtgaagagaaaaacacacaaacatccctcacctctctctgttacaaattacaccaatgttagatgcaagtgtttttcgctctcagaaagttttca |
865 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6085687 |
caagagtgaagagaaaaacacacaaacattcctcacctctctctgttacaaattacaccaatgttagatgcaagtgtttttcgctctcagaaagttttca |
6085588 |
T |
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| Q |
866 |
actaaactcacactgcattt |
885 |
Q |
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|||||||||||||||||||| |
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| T |
6085587 |
actaaactcacactgcattt |
6085568 |
T |
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