View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6713_high_4 (Length: 369)
Name: NF6713_high_4
Description: NF6713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6713_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 22 - 368
Target Start/End: Original strand, 51341156 - 51341502
Alignment:
| Q |
22 |
attaaaccattatccacacaatcattagggaaatcatagagattagtgtaaaattccaaaacatgattctcaatatgagtaggatcaaaccaatttaaag |
121 |
Q |
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| T |
51341156 |
attaaaccattatccacacaatcattagggacatcatagagattagtgtaaaattccaaaacatgattctcaatatgagtaggatcaaaccaatttaaag |
51341255 |
T |
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| Q |
122 |
atggaagcatgtcaaattttagccattatgtggaaaaatacaatgtttctatccccatgagtaaaaccaatttaaagaagatttttgtttcgaaatagct |
221 |
Q |
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| T |
51341256 |
atggaagcatgtcaaattttagccattatgtggaaaaatacaatgtttctatccccatgagtaaaaccaatttaaagaagatttttgtttccaaatagct |
51341355 |
T |
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| Q |
222 |
tcttcataacttatggcttgttgcaagttggattgagcctcagtttccatgttgtgaagattatcagaatatccttcatcagatatatttgttgtttaat |
321 |
Q |
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| T |
51341356 |
tcttcataacttaaggcttgttgcaagttggattgagcctcagtttccatgttgtgaagattatcagaatatccttcatcagatatatttgttgtttaat |
51341455 |
T |
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| Q |
322 |
gaattacacatccttgatgtattgatcaactctgactttaacattgc |
368 |
Q |
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| T |
51341456 |
gaattacacatccttgatgtattgatcaactctgactttaacattgc |
51341502 |
T |
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