View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6713_high_5 (Length: 319)
Name: NF6713_high_5
Description: NF6713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6713_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 15938419 - 15938700
Alignment:
| Q |
20 |
gttaagttgtcggcggggctaaatacattttaattgtattctttaagattcaaattagacatgagttttgactagaagcatgtttagtctctgtttgtgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15938419 |
gttaagttgtcggcggggctaaatacattttaattgtattctttaagattcaaattagacatgagttttgactagaagcatgtttaatctctgtttgtgt |
15938518 |
T |
|
| Q |
120 |
cggtgcactttgacataatgtaattgttagaagaaaacgaaagtttgtgtgttatgaattttgaaagaaggtgaaagaaatgcaaatacatagcattcag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15938519 |
cggtgcactttgacataatgtaattgttagaagaaaacgaaagtttgtgtgttatgaattttgaaagaaggtgaaagaaatgcaaatacatagcattcag |
15938618 |
T |
|
| Q |
220 |
tttaatttgtaccacataaattgtcggttcactttgacatgaacactccaacaacaaaaaatattcaaatctttctctcact |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15938619 |
tttaatttgtaccacataaattgtcggttcactttgacatgaacactccaacaacaaaaaatattcaaatctttctctcact |
15938700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 39821527 - 39821642
Alignment:
| Q |
34 |
ggggctaaatacattttaattgtattct-ttaagattcaaattagacatgagttttgactagaagcatg-tttagtctctgtttgtgtcggtgcactttg |
131 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| | |||||| |||||||| |||||||||||||||| || ||| || |||||| ||||||||||| |
|
|
| T |
39821527 |
ggggctaaatacattttaattgtcttctccaaagctgcaaattggacatgagctttgactagaagcatgcttgggtcggtgcttgtgtgggtgcactttg |
39821626 |
T |
|
| Q |
132 |
acataatgtaattgtt |
147 |
Q |
| |
|
|||| ||| ||||||| |
|
|
| T |
39821627 |
acatgatgaaattgtt |
39821642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University