View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6713_high_6 (Length: 317)
Name: NF6713_high_6
Description: NF6713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6713_high_6 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0318 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 43381397 - 43381064
Alignment:
| Q |
1 |
ctggggtgttaattggttcatatccaatacggcaagaaaatagaacagaaaataaatgattttagatactaaaatattcaattggaaaataaatggaaca |
100 |
Q |
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| T |
43381397 |
ctggggtgttaattggttcatatccaatacggcaagaaaatagaacagaaaataaatgattctagatactaaaatattcaattggaaaataaatggaaca |
43381298 |
T |
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| Q |
101 |
tcctctttcacacaaaatccagtccaaatgattcaatatataatcatcatgtattataaactgcaaact------------aatcatcatcttcat---- |
184 |
Q |
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| T |
43381297 |
tcctctttcacacaaaatccagtccaaatgagtcaatatataatcatcatgtattataaactgcaaagtaatttcctgaagaatcatcatcttcataaag |
43381198 |
T |
|
| Q |
185 |
-aaagaaaatatttgataaatactccaaagagttttgaatatgataataaactaaacaatggaaaaaaggggattaaaatccaaccaaaacagttagctg |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43381197 |
aaaagaaaatatttgataaatactccaaagagttttgaatatgataataaactaaacaatggaaaaaaggggattaaaatccaaccaaaacagttagctg |
43381098 |
T |
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| Q |
284 |
cattaatgctagacctcaatcgtcaaatctcaaa |
317 |
Q |
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| T |
43381097 |
cattaatgctagacctcaaacgtgaaatctcaaa |
43381064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 25870964 - 25870744
Alignment:
| Q |
7 |
tgttaattggttcatatccaatacggcaagaaaatagaacagaaaataaatgattttagatactaaaatattcaattggaaaataaatggaacatcctct |
106 |
Q |
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| T |
25870964 |
tgttaattggttcatatccaatacggcaagaaaatagaacagaaaataaatgattctagatactaaaatattcaattggaaaataaatggaacttcctct |
25870865 |
T |
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| Q |
107 |
ttcacacaaaatccagtccaaatgattcaatatataatcatcatgtattataaactgcaaact------------aatcatcatcttcataaagaaaata |
194 |
Q |
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| T |
25870864 |
ttcacacaaaatccagtccaaatgattcaatatataatcatcatgtattataaactgcaaactaatttcctgaagaatcatcatcttcataaagaaaata |
25870765 |
T |
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| Q |
195 |
tttgataaatactccaaagag |
215 |
Q |
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| T |
25870764 |
tttgataaatactccaaagag |
25870744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0318 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0318
Description:
Target: scaffold0318; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 3628 - 3706
Alignment:
| Q |
7 |
tgttaattggttcatatccaatacggcaagaaaatagaacagaaaataaatgattttagatactaaaatattcaattgga |
86 |
Q |
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| T |
3628 |
tgttaactggttcttatccaatacgaaaa-aaaatagaacagataataagtgattttagatactaaaattttcaattgga |
3706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 47480801 - 47480731
Alignment:
| Q |
16 |
gttcatatccaatacggcaagaaaatagaacagaaaataaatgattttagatactaaaatattcaattgga |
86 |
Q |
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|||| ||||||||||| || ||||||||||| | ||||| ||||||||||||||||||| |||||||||| |
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| T |
47480801 |
gttcttatccaatacgaaaaaaaaatagaacaaataataagtgattttagatactaaaatgttcaattgga |
47480731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 29334699 - 29334770
Alignment:
| Q |
14 |
tggttcatatccaatacggcaagaaaatagaacagaaaataaatgattttagatactaaaatattcaattgga |
86 |
Q |
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| T |
29334699 |
tggttcttatccaatacgaaaa-aaaatagaacaaataataagtgattttagatactaaaatgttcaattgga |
29334770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 30401941 - 30401892
Alignment:
| Q |
37 |
aaaatagaacagaaaataaatgattttagatactaaaatattcaattgga |
86 |
Q |
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| T |
30401941 |
aaaatagaacagctaataagtgattttagatactaaaatgttcaattgga |
30401892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 5004513 - 5004457
Alignment:
| Q |
14 |
tggttcatatccaatacggcaagaaaatagaacagaaaataaatgattttagatact |
70 |
Q |
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| T |
5004513 |
tggttcttatccaatatgaaaaaaaaatagaacagataataagtgattttagatact |
5004457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 20351035 - 20351099
Alignment:
| Q |
7 |
tgttaattggttcatatccaatacggcaagaaaatagaacagaaaat-aaatgattttagatact |
70 |
Q |
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|||||| | |||| ||||||| |||| || ||||||||||||| ||| ||||||||||||||||| |
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| T |
20351035 |
tgttaactagttcttatccaacacggaaaaaaaatagaacagataataaaatgattttagatact |
20351099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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