View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6713_low_11 (Length: 262)
Name: NF6713_low_11
Description: NF6713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6713_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 3684534 - 3684299
Alignment:
| Q |
1 |
gagactaccaactccagcagagaattggttccaccagccactcatagtgggaacaaggagcatcaatgtgtttctcaaaaaaccaataccacggccacgg |
100 |
Q |
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| T |
3684534 |
gagactaccgactccagcagagaactggttccaccagccactcatagtgggaacaaggagaatcaatgtgtttcccaaaaaaccaataccacggc----- |
3684440 |
T |
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| Q |
101 |
ctcttatgaactaattcctccacatttagtacttactagaaaacagaacatcattaaaggatgtctatatagaccacacgacagtatgtcaaaccaacaa |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3684439 |
-tcttatgaactaagtcctccacatttagtacttactagaaaacaaaacatcattaaaggatgtctatatagaccacacgacagtatgtcaaaccaacaa |
3684341 |
T |
|
| Q |
201 |
aaaatcacaagtaatcttttctctccccgctaaccccaagaa |
242 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||| |
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| T |
3684340 |
aatatcacacctaatcttttctctccccgctaaccccaagaa |
3684299 |
T |
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