View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6713_low_15 (Length: 214)
Name: NF6713_low_15
Description: NF6713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6713_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 812922 - 813120
Alignment:
| Q |
1 |
cccaagcggaaaaactaaagtattttcttgaactatgctgagagtct--aatcattctatatagcaaaagctccatgatcccaaaagagtaggcaagatg |
98 |
Q |
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| T |
812922 |
cccaagctgaaaaactaatgtattttcttgaactatgcttagattctctaatcattctatatagcaaaatctccatgatcccaaaagagtaggcaagatg |
813021 |
T |
|
| Q |
99 |
caaccaactcaatagtataccgaaaagaatattgccatcaaaccctagattaatcatatagattgtatttcaaaatattccacatatacatagaagagt |
197 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
813022 |
caaccaactcaatagtataccgaaaagaatattaccatcaaaccctagattaattatatagattgtatttcaaaatattccacatatacatagaagagt |
813120 |
T |
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