View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6713_low_2 (Length: 763)
Name: NF6713_low_2
Description: NF6713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6713_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 429
Target Start/End: Complemental strand, 10417061 - 10416642
Alignment:
| Q |
11 |
tttggtgtttgagaaattgcagatagtttacaaaggtagaatcaagaagaggatggaatattttgcaatcaaaaccgttgttaaatctcacaagaacatg |
110 |
Q |
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| T |
10417061 |
tttggtgtttgagaaattgcagatagtttagaaaggtagaatcaagaagaggatggaatattttgcaatcaaaaccgttgttaaatctcacaagaacatg |
10416962 |
T |
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| Q |
111 |
atcttcaagaagtgaattatcatttaattatggaaattaatcatgttaaa-cacnnnnnnnnnnnnngaaggaaaaaagataaacacttttgttgctaag |
209 |
Q |
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| T |
10416961 |
atcttcaagaagtgaattatcatttaattatggaaattaatcatgttaaaacactttttttttttttgaaggaaaaaagttaaacacttttgttgctaag |
10416862 |
T |
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| Q |
210 |
ttacaaacggcagaaagaccataagtatctagcgtttgtataacttaaaagggttaagagtaaaatttggactatttttgtttgagcttattctaagtct |
309 |
Q |
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| T |
10416861 |
ttacaaacgacagaaagaccataagtatctagcgtttgtataacttaaaagggttaagagtaaaatttggcctatttttgtttgagcttattctaaatct |
10416762 |
T |
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| Q |
310 |
tattgttatagaaaaatcttattataatttatactctttttcttgcaatcggaccatctacattcctcatatagcaaaccttgtagaagcttaaccaaat |
409 |
Q |
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| T |
10416761 |
tattgttatagaaaaatcttattataatttatactctttttcttgcaatcggaccatctacattcctcatatagcaaaccttgtagaagcttaaccaaat |
10416662 |
T |
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| Q |
410 |
ctattaggcattatctcaac |
429 |
Q |
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| T |
10416661 |
ccattaggcattatctcaac |
10416642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 517 - 745
Target Start/End: Complemental strand, 10416554 - 10416319
Alignment:
| Q |
517 |
ccttgttcaattttaatgaaatatggttatacaacataaggccacatataatttcagtttgttcaaaaacacttcctaagtagctagcaagggccaaagg |
616 |
Q |
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| T |
10416554 |
ccttgttcaattttaatgaaatatgat-atacaacataaggccacatataatttcagtttgttcagaaacacttcccaagtagctagcaagggacaaagg |
10416456 |
T |
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| Q |
617 |
gattcaaatccctaatgtcatgcaatgtttaaaaattgattaatcaagaaacttaagctttggtttcttcttct--------taaataaagaaacttaag |
708 |
Q |
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| T |
10416455 |
gattcaaattcctaatgtcatgcaatgtttaaaaattgattaatcaagaaacttaagctttggtttcttcttcttaaaaaaataaagaaagaaacttaag |
10416356 |
T |
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| Q |
709 |
ctttggtcacattaaaatatagaaacttggttaccta |
745 |
Q |
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| T |
10416355 |
ctttggtcacattaaaatatagaaacttggttaccta |
10416319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 6783066 - 6782959
Alignment:
| Q |
27 |
ttgcagatagtttacaaaggtagaatcaagaagaggatggaatattttgcaatcaaaaccgttgttaaatctcacaagaac-atgatcttcaagaagtga |
125 |
Q |
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| T |
6783066 |
ttgcagactgtttacaaaggtagaaagaagaagacgatcgagtatttcgcaatcaaaagtgtcgataaatctcagaagaacaaggttcttcaagaagtaa |
6782967 |
T |
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| Q |
126 |
attatcat |
133 |
Q |
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| T |
6782966 |
gttatcat |
6782959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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