View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6713_low_3 (Length: 685)

Name: NF6713_low_3
Description: NF6713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6713_low_3
NF6713_low_3
[»] chr8 (2 HSPs)
chr8 (15-387)||(25588813-25589185)
chr8 (491-684)||(25589289-25589482)
[»] chr5 (2 HSPs)
chr5 (15-387)||(26374028-26374400)
chr5 (491-684)||(26374504-26374697)
[»] chr6 (8 HSPs)
chr6 (16-242)||(14127350-14127576)
chr6 (494-684)||(14126875-14127065)
chr6 (17-206)||(12917333-12917522)
chr6 (246-365)||(14127185-14127304)
chr6 (16-195)||(8758022-8758201)
chr6 (506-659)||(12927507-12927660)
chr6 (279-348)||(12927368-12927437)
chr6 (565-636)||(8758559-8758630)
[»] chr3 (5 HSPs)
chr3 (16-242)||(17918498-17918724)
chr3 (494-667)||(17919018-17919191)
chr3 (16-206)||(15428729-15428919)
chr3 (246-387)||(17918770-17918911)
chr3 (279-348)||(15429010-15429079)
[»] chr2 (3 HSPs)
chr2 (18-241)||(24081380-24081602)
chr2 (559-667)||(24080921-24081029)
chr2 (273-364)||(24081215-24081306)
[»] scaffold0071 (2 HSPs)
scaffold0071 (16-206)||(33319-33509)
scaffold0071 (279-348)||(33159-33228)


Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 25588813 - 25589185
Alignment:
Q  15 ggacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25588813 ggacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgt 25588912  T
Q  115 tgaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25588913 tgaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgt 25589012  T
Q  215 tagcttcaccattcaccttgggtgcatctccaataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaattt 314  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589013 tagcttcaccattcaccttgggtgcatcttcaataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaattt 25589112  T
Q  315 aacctgttcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaaaaacctccctcattg 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589113 aacctgttcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaaaaacctccctcattg 25589185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 491 - 684
Target Start/End: Original strand, 25589289 - 25589482
Alignment:
Q  491 caacatcggcattaattttcaacttattttttcctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaa 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589289 caacatcggcattaattttcaacttattttttcctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaa 25589388  T
Q  591 cctatcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacattattgagagctttctgaagttttgtgatgtccatctcattg 684  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||    
T  25589389 cctatcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacattattgagagctttctgaagttttgtgacgtccttcacattg 25589482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 26374028 - 26374400
Alignment:
Q  15 ggacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374028 ggacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgt 26374127  T
Q  115 tgaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374128 tgaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgt 26374227  T
Q  215 tagcttcaccattcaccttgggtgcatctccaataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaattt 314  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374228 tagcttcaccattcaccttgggtgcatcttcaatatcacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaattt 26374327  T
Q  315 aacctgttcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaaaaacctccctcattg 387  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||    
T  26374328 aacctgttcaagtgcgtattttctagccaacgccatttcttccttctccaaaacaaaaaaacctccctcattg 26374400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 491 - 684
Target Start/End: Original strand, 26374504 - 26374697
Alignment:
Q  491 caacatcggcattaattttcaacttattttttcctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaa 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374504 caacatcggcattaattttcaacttattttttcctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaa 26374603  T
Q  591 cctatcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacattattgagagctttctgaagttttgtgatgtccatctcattg 684  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| || |||||    
T  26374604 cctatcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacattattaagagctttctgaagttttgtgacgtccttcacattg 26374697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 14127576 - 14127350
Alignment:
Q  16 gacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgtt 115  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14127576 gacatcatgtcttctttaccgggaaaaaataaaatcacattatctccacctctaggtactacacgaacattatcaaagccagcatcaatgattttctgtt 14127477  T
Q  116 gaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgtt 215  Q
    |||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14127476 gaacaattggaataaattgcccattcagcaatttagccaacgcctctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgtt 14127377  T
Q  216 agcttcaccattcaccttgggtgcatc 242  Q
     ||||||||| ||||||||||||||||    
T  14127376 tgcttcaccaatcaccttgggtgcatc 14127350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 494 - 684
Target Start/End: Complemental strand, 14127065 - 14126875
Alignment:
Q  494 catcggcattaattttcaacttattttttcctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaacct 593  Q
    |||| |||||| ||||| |||||||||||||||||||||||||||  ||||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  14127065 catcagcattatttttcgacttattttttcctcctactgcagccgatttcttaccatcctccaacccattcaacggtacttttttaacctcaccaaacct 14126966  T
Q  594 atcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacattattgagagctttctgaagttttgtgatgtccatctcattg 684  Q
    |||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||||| || ||||||| || |||| || |||||    
T  14126965 atcaaagcatgcaacatttgtccaaactttattctgaccaaaataaacattattaagagctttttgtagttttgcgacgtccttcacattg 14126875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 12917333 - 12917522
Alignment:
Q  17 acatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttg 116  Q
    ||||||| |||||||| ||||| ||||| | || |||||||||||||||||||||||  ||||||| || |||||| ||||||||||||||||| |||||    
T  12917333 acatcatatcttctttgccgggacaaaaaagaaccacattatctccacctctaggtaacacacgaatattatcaaaaccagcatcaatgattttttgttg 12917432  T
Q  117 aacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcg 206  Q
     ||||| |||||| | ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| |||  |||||||||    
T  12917433 cacaataggaatatagtccccattcagcactcttgcaaacgcccctttacttgcccaaacaacatcttcattatcggaaataaacttgcg 12917522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 246 - 365
Target Start/End: Complemental strand, 14127304 - 14127185
Alignment:
Q  246 aataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaac 345  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||    
T  14127304 aatatcaccagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgctcaagtgcgtgttttctaaccaac 14127205  T
Q  346 gccaattcttccttctccga 365  Q
     ||| |||||||||||||||    
T  14127204 accatttcttccttctccga 14127185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 8758022 - 8758201
Alignment:
Q  16 gacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgtt 115  Q
    ||||||||||| ||||| || || |||||||||| ||| ||||  || |||||||| |  || || |||| |||||| ||  ||||||| ||||| ||||    
T  8758022 gacatcatgtcgtcttttcctggacaaaataaaaccacgttattgccccctctaggcagcacccggacattatcaaacccgacatcaataattttttgtt 8758121  T
Q  116 gaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaa 195  Q
    | |||   || ||||| || ||||||| |||| | |||||||| ||||||||||||||||||||||| ||||||||||||    
T  8758122 gcacagaaggtataaattctccattcaacactcttgccaacgcacctttacttgcccaaacaacatcatcattatcagaa 8758201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 506 - 659
Target Start/End: Original strand, 12927507 - 12927660
Alignment:
Q  506 ttttcaacttattttttcctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaacctatcaaagcgtgc 605  Q
    ||||| |||||||||||||||| ||| | ||||  || ||||||||||||||  | |||||||| || ||  ||||||| |||||||| ||||| |||||    
T  12927507 ttttcgacttattttttcctcccacttctgccgattttttaccatcctccaactccttcaacagctccttcctaacctccccaaacctgtcaaaacgtgc 12927606  T
Q  606 aacattcgcccaaactttattctgaccaaaataaacattattgagagctttctg 659  Q
     | ||||||||| ||| ||| ||| || ||  |||||||||| |||||||||||    
T  12927607 gatattcgcccacactctatactggcctaatgaaacattattaagagctttctg 12927660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 12927368 - 12927437
Alignment:
Q  279 ctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgcc 348  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||| || |  |||||||||||||||    
T  12927368 ctccctttcctcctcactaaccttagcatctaatttaacctgttcaagagcctgctttctagccaacgcc 12927437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 565 - 636
Target Start/End: Original strand, 8758559 - 8758630
Alignment:
Q  565 aacagttcttttttaacctcaccaaacctatcaaagcgtgcaacattcgcccaaactttattctgaccaaaa 636  Q
    |||| |||||||||||| || |||||||||||||| || |||||||| ||||| ||| ||||| ||||||||    
T  8758559 aacaattcttttttaacttctccaaacctatcaaaacgcgcaacatttgcccacactctattcggaccaaaa 8758630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 17918498 - 17918724
Alignment:
Q  16 gacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgtt 115  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  17918498 gacatcatgtcttctttaccggagcaaaataaaatcacattatctccacctctaggtactacacgaacattttcaaagccaacatcaatgattttctgtt 17918597  T
Q  116 gaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgtt 215  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  17918598 gaacaattggaataaaatccccattcagcactgtagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgatacttgcgcgtgacttt 17918697  T
Q  216 agcttcaccattcaccttgggtgcatc 242  Q
     ||||||||| ||||||||||||||||    
T  17918698 tgcttcaccaatcaccttgggtgcatc 17918724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 494 - 667
Target Start/End: Original strand, 17919018 - 17919191
Alignment:
Q  494 catcggcattaattttcaacttattttttcctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaacct 593  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |    
T  17919018 catcggcgttaattttcgacttattttttcctcctactgcagccggtttcttaccatcctccaacccattcaacagttctgttttaacctcaccaaactt 17919117  T
Q  594 atcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacattattgagagctttctgaagttttg 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||    
T  17919118 atcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaatattattaagagctttctgtagttttg 17919191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 15428729 - 15428919
Alignment:
Q  16 gacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgtt 115  Q
    |||||||| || ||||| ||| | |||||||||| |||||||||||| ||||||||||  || ||||||| |||||| ||||| ||||||||||||||||    
T  15428729 gacatcatatcatctttgccgagacaaaataaaaccacattatctcctcctctaggtaacacccgaacattatcaaaaccagcgtcaatgattttctgtt 15428828  T
Q  116 gaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcg 206  Q
    | ||||| |||||| | |||||||| |||||| | || |||||||||||||||||||||||||||||||| ||||| |||  |||||||||    
T  15428829 gcacaataggaatacagtccccatttagcactcttgcaaacgcccctttacttgcccaaacaacatcttcgttatcggaaacaaacttgcg 15428919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 246 - 387
Target Start/End: Original strand, 17918770 - 17918911
Alignment:
Q  246 aataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaac 345  Q
    |||| ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||  |||||||||||||    
T  17918770 aataacaccagctccgccgcttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacttgctcaagtgcgcgttttctagccaac 17918869  T
Q  346 gccaattcttccttctccgaaacagaaaaacctccctcattg 387  Q
    |||| |||||||||||||||| ||  || |||||| ||||||    
T  17918870 gccatttcttccttctccgaatcaataatacctccatcattg 17918911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 15429010 - 15429079
Alignment:
Q  279 ctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgcc 348  Q
    ||||||||||||||||||  | || ||||| ||||||||||||||||| || |  |||||||||||||||    
T  15429010 ctccctttcctcctcactctcattcgcatttaatttaacctgttcaagagcctgctttctagccaacgcc 15429079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 24081602 - 24081380
Alignment:
Q  18 catcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttga 117  Q
    ||||||||||||||||| ||| |||||||||| | |||||||||| ||||||||||  || ||||||| ||| || |||||||||||||||||||||||     
T  24081602 catcatgtcttctttacggggacaaaataaaacctcattatctcctcctctaggtaacacccgaacattatcgaaaccagcatcaatgattttctgttgc 24081503  T
Q  118 acaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttag 217  Q
    | ||| |||||||| | | |||||| |||| | ||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||| ||  | |    
T  24081502 ataataggaataaagttctcattcaacactcttgccaac-accctttacttgcccaaacaacatcatcattatcagaatgaaacttgcgcgtaacaattg 24081404  T
Q  218 cttcaccattcaccttgggtgcat 241  Q
    |  ||||||||||||||| |||||    
T  24081403 cgccaccattcaccttggatgcat 24081380  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 559 - 667
Target Start/End: Complemental strand, 24081029 - 24080921
Alignment:
Q  559 ccattcaacagttcttttttaacctcaccaaacctatcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacattattgagagctttct 658  Q
    ||||| |||| |||||| ||||||||||||||||||||||||| |||||||||  |||| |||||||||||||||||| | |||||||| ||| ||||||    
T  24081029 ccattgaacaattctttcttaacctcaccaaacctatcaaagcatgcaacattttcccacactttattctgaccaaaaaagacattattcagaactttct 24080930  T
Q  659 gaagttttg 667  Q
    | |||||||    
T  24080929 gcagttttg 24080921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 273 - 364
Target Start/End: Complemental strand, 24081306 - 24081215
Alignment:
Q  273 tacttgctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgccaattcttccttctccg 364  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| |  |||||||||||| |||  |||||||||||||    
T  24081306 tactttctccctttcctcctcactacccttagcattcaatttaacttgctcaagtgcctgctttctagccaacaccatctcttccttctccg 24081215  T

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Target: scaffold0071 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 33509 - 33319
Alignment:
Q  16 gacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgtt 115  Q
    |||||||| || ||||| ||| | |||||||||| |||||||||||| ||||||||||  || ||||||| |||||| ||||| ||||||||||||||||    
T  33509 gacatcatatcatctttgccgagacaaaataaaaccacattatctcctcctctaggtaacacccgaacattatcaaaaccagcgtcaatgattttctgtt 33410  T
Q  116 gaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcg 206  Q
    | ||||| |||||| | |||||||| |||||| | || |||||||||||||||||||||||||||||||| ||||| |||  |||||||||    
T  33409 gcacaataggaatacagtccccatttagcactcttgcaaacgcccctttacttgcccaaacaacatcttcgttatcggaaacaaacttgcg 33319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 33228 - 33159
Alignment:
Q  279 ctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgcc 348  Q
    ||||||||||||||||||  | || ||||| ||||||||||||||||| || |  |||||||||||||||    
T  33228 ctccctttcctcctcactctcattcgcatttaatttaacctgttcaagagcctgctttctagccaacgcc 33159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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