View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6713_low_4 (Length: 476)
Name: NF6713_low_4
Description: NF6713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6713_low_4 |
 |  |
|
| [»] scaffold0329 (1 HSPs) |
 |  |  |
|
| [»] scaffold0042 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 46028696 - 46028422
Alignment:
| Q |
1 |
atccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttattt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46028696 |
atccctttaggtttagcccgacagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcatgctgttattt |
46028597 |
T |
 |
| Q |
101 |
ggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggtt |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46028596 |
ggaccatctgaacttcccggaatgaccttgttttttctgatggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggtt |
46028497 |
T |
 |
| Q |
201 |
cctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta |
275 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46028496 |
cctggctaagtgtcctgctagtttctactccttttataagtgggaggtgcagcccgttctttgttggcaacggta |
46028422 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 328 - 464
Target Start/End: Complemental strand, 46028369 - 46028233
Alignment:
| Q |
328 |
ctttgcctctacctatccagcctgtcttcttgggtctctccttgcgcttttccttgctgggtgtgctggttgtgacggggccctttccgggggccatttt |
427 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46028369 |
ctttgcctctacctatccaacttgtcttcttgggtctctccttgcgcttttccttgctgggtgtgctggttgtgacggaaccctttccgggggccatttt |
46028270 |
T |
 |
| Q |
428 |
ggtgttggttttcttcttctttttcttggtgtgttat |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46028269 |
ggtgttggttttcttcttctttttcttggtgtgttat |
46028233 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 23177065 - 23176890
Alignment:
| Q |
93 |
tgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgg |
192 |
Q |
| |
|
||||||||||||||||||||| || ||||| | |||| |||| ||| |||| | | |||||| | |||||||| |||||| |||||||||||||||| |
|
|
| T |
23177065 |
tgttatttggaccatctggacgtctcggaacg-ccttattttctctagtggcactctccgtgaggagcctgtggtgtatagagtgaaactcttagcttgg |
23176967 |
T |
 |
| Q |
193 |
aagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggca |
269 |
Q |
| |
|
||| ||||||| || ||||| | |||||||| ||| | | | ||| || |||||||||||||||||| |||||||| |
|
|
| T |
23176966 |
aagcggttccttgccaagtgtcatgctagttcatgcacttatcatgagttggaggtgcagcccgtcctatgttggca |
23176890 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 40188283 - 40188169
Alignment:
| Q |
161 |
ctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcct |
260 |
Q |
| |
|
|||||||||||| ||| |||||| ||||||||||||||||| || |||||||||||||||||| ||| | | | ||| || ||||||||||| |||| | |
|
|
| T |
40188283 |
ctgtggtggataaagcaaaactcatagcttggaagtggttcttgcctaagtgccctgctagttcttgcacttatcatgagtaggaggtgcagctcgtctt |
40188184 |
T |
 |
| Q |
261 |
ttgttggcaacggta |
275 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
40188183 |
gtgttggcagcggta |
40188169 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 12258376 - 12258465
Alignment:
| Q |
164 |
tggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagc |
253 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||| |||||| | |||| |||||||||||||| |
|
|
| T |
12258376 |
tggtggatagagttaaactcttagcttgaaagtggttcctggctaagtgtcctgccagtccctgctctctctatgagtgggaggtgcagc |
12258465 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 265
Target Start/End: Original strand, 33743390 - 33743574
Alignment:
| Q |
81 |
tgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaa |
180 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| | ||||| || |||||| | ||| ||||||| | | |||| | | |||||||| |||| ||| |
|
|
| T |
33743390 |
tgtttggcatgctgttatttggaccatttgggcgtcccgaaacgaccttatctttgctggtggcttactccgagaggagccagtggtggacagagttaaa |
33743489 |
T |
 |
| Q |
181 |
ctcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgtt |
265 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||| ||| || | |||| |||||||||||| |||||||| |||| |
|
|
| T |
33743490 |
atcttagcttgaaagtggttcttggctaagtgccctgctagtccctgttctctctatgagtgggaggtgcaacccgtcctgtgtt |
33743574 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 33888605 - 33888676
Alignment:
| Q |
152 |
gtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt |
223 |
Q |
| |
|
|||||| ||| ||||||||||||| | ||||||||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
33888605 |
gtgaggagtcagtggtggatagagtggaactcttagattggaagtggtttcgggctaagtgccctgctagtt |
33888676 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 433
Target Start/End: Original strand, 19513534 - 19513631
Alignment:
| Q |
337 |
tacctatccagcctgtcttcttgggtctctccttgcgc-ttttccttgctgggtgtgctggttgtgacggggccctttccgggggccattttggtgtt |
433 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| ||| | | || |||| ||||||| ||||||| ||| |||||| |
|
|
| T |
19513534 |
tacctatccgacctgtcttcttgggtctctccttgcgctttttccttgttgggtgcgcttggtatggcgggtccctttctgggggccttttgggtgtt |
19513631 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 26557929 - 26557858
Alignment:
| Q |
152 |
gtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt |
223 |
Q |
| |
|
|||||| | |||||||||| |||| ||||| ||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
26557929 |
gtgaggagcctgtggtggacagagttaaacttttagcttggtagtggctcctggctaagtgccctgctagtt |
26557858 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 52372498 - 52372782
Alignment:
| Q |
1 |
atccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttattt |
100 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||| |||| |||||| |
|
|
| T |
52372498 |
atccctataggtttagcctgacagttcctttcctttaccgggttaggtagggggaagcgtgttagaatatgtttacttattgtttggcatgctattattt |
52372597 |
T |
 |
| Q |
101 |
ggaccatctggacttcccggaatgaccttgtttt----------ttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagctt |
190 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52372598 |
ggaccatctggacctcccggaatgacctttttttcttcttcttcttctggtggcgcccatagtgaggggtctgtggtggatagagcgaaactcttagctt |
52372697 |
T |
 |
| Q |
191 |
ggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta |
275 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| ||||||| |||||||||||| ||| ||||||||||||| ||||| |
|
|
| T |
52372698 |
agaagtggttcctggctaggtgccctgctagttcctgctctttttatgagtgggaggtgcaacccatcctttgttggcagcggta |
52372782 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 81 - 275
Target Start/End: Complemental strand, 25410749 - 25410555
Alignment:
| Q |
81 |
tgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaa |
180 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |||||| | | ||| ||| |||||| ||||||||| | | | |||| ||||| ||||||||| |||| |
|
|
| T |
25410749 |
tgtttggcatgctgttatttgaaccatctagacttctcatagtgatcttattttttttggtggtgctcttcgagaggaacctgtgatggatagagtgaaa |
25410650 |
T |
 |
| Q |
181 |
ctcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||| |||||| || |||| ||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
25410649 |
ctcttagcttggaagtggttcctggctaagtaccttgctagttcctgctctttctatgagtgggaggtgcagcccgtcttgtgttgccaacggta |
25410555 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 32 - 265
Target Start/End: Original strand, 51871072 - 51871305
Alignment:
| Q |
32 |
cctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgt |
131 |
Q |
| |
|
|||||||||| |||||| |||||| | | ||||| ||||||| ||| |||||||| ||||||||| |||||||| ||||| |||| ||||||||| | |
|
|
| T |
51871072 |
cctttacgggtttaggtggggggacgagagttaggttaggtttgcttcttgtttggcatgctgttatctggaccatttggacgacccgaaatgaccttat |
51871171 |
T |
 |
| Q |
132 |
tttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctcc |
231 |
Q |
| |
|
||| || ||||| | |||||| | | |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||| || |
|
|
| T |
51871172 |
ctttgttgttggtgttctccgtgaggagccagtggtggatagaattaaactcttagcttggaagtggttcctgactaagtgccctgctagttcctgttct |
51871271 |
T |
 |
| Q |
232 |
ttttatgggtgggaggtgcagcccgtcctttgtt |
265 |
Q |
| |
|
| |||| ||||||||||||||||||||| |||| |
|
|
| T |
51871272 |
ctctatgagtgggaggtgcagcccgtcctgtgtt |
51871305 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 94 - 275
Target Start/End: Complemental strand, 44504118 - 44503937
Alignment:
| Q |
94 |
gttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgga |
193 |
Q |
| |
|
|||||||||||||| ||||| || |||| ||||| |||| |||||||| || | | |||||| | |||||||||||| || ||| ||||||||||||| |
|
|
| T |
44504118 |
gttatttggaccatttggacgtcttggaacgacctcattttctctggtggcgctcttcgtgaggagcctgtggtggataaagtgaagctcttagcttgga |
44504019 |
T |
 |
| Q |
194 |
agtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta |
275 |
Q |
| |
|
|||||||| || ||||||| | || ||||| |||||| ||| ||| |||||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
44504018 |
agtggttcatgactaagtgtcgtggtagttcctgctcttttcatgagtgggaggtgcagctcgtcctttgctggcaccggta |
44503937 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 93 - 275
Target Start/End: Original strand, 9644301 - 9644483
Alignment:
| Q |
93 |
tgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgg |
192 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| | || |||||||| | | |||||| | || |||||||||||||||||||||| | |||| |
|
|
| T |
9644301 |
tgttatttggaccatctggatgtcccggaacgaccttatcttctctggtggctctctccgtgaggagcctatggtggatagagcgaaactcttgggttgg |
9644400 |
T |
 |
| Q |
193 |
aagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta |
275 |
Q |
| |
|
||||||||||| |||||||| ||| |||||| ||||||||| ||| |||||||| || | ||||||||| ||||| ||||| |
|
|
| T |
9644401 |
aagtggttcctagctaagtgtcctactagttcttgctcctttcatgaatgggaggtacatctcgtcctttgctggcatcggta |
9644483 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 152 - 275
Target Start/End: Original strand, 40799640 - 40799763
Alignment:
| Q |
152 |
gtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgca |
251 |
Q |
| |
|
|||||| | ||||||||||||||| ||||||||| ||||| |||| |||||| ||||||||| |||||||| ||||| ||| ||| |||||||||||| |
|
|
| T |
40799640 |
gtgaggagcctgtggtggatagagtgaaactcttggcttgaaagttgttcctagctaagtgcattgctagttcttgctcttttcatgagtgggaggtgca |
40799739 |
T |
 |
| Q |
252 |
gcccgtcctttgttggcaacggta |
275 |
Q |
| |
|
|| ||||||||| ||||| ||||| |
|
|
| T |
40799740 |
gctcgtcctttgctggcatcggta |
40799763 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 21926608 - 21926678
Alignment:
| Q |
152 |
gtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt |
223 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
21926608 |
gtgaggagtctgtggtggatagagtgaaactcttagcctggaagtggtt-ctggctaagtgccctgctagtt |
21926678 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 254
Target Start/End: Original strand, 13297595 - 13297685
Alignment:
| Q |
164 |
tggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcc |
254 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||||| |||||||||| |||||||||| |||| | | | ||| ||||||||||||||| |
|
|
| T |
13297595 |
tggtggatagagtgaaactcttagcttgaaattggttcatggctaagtgtcctgctagttcctgcacttatcatgagtgggaggtgcagcc |
13297685 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 328 - 392
Target Start/End: Original strand, 52372835 - 52372900
Alignment:
| Q |
328 |
ctttgcctctacctatccagcctgtcttcttgggtctctccttgcgc-ttttccttgctgggtgtg |
392 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
52372835 |
ctttgcctctacctctccggcctgtcttcttgggtctctccttgcgctttttccttgctggatgtg |
52372900 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 3227729 - 3227649
Alignment:
| Q |
178 |
aaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtc |
258 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||||||||||||||| |||| || | |||| |||||| ||||| |||||| |
|
|
| T |
3227729 |
aaactcttagcttgaaagtgattcctggttaagtgccctgctagtctctgttctctctatgagtgggaagtgcaacccgtc |
3227649 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 267
Target Start/End: Original strand, 15274347 - 15274451
Alignment:
| Q |
163 |
gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtccttt |
262 |
Q |
| |
|
|||||||| |||| |||||| |||||||| ||||| ||||| |||||||| |||||||||| || || | |||| ||||||||||||| | ||||| | |
|
|
| T |
15274347 |
gtggtggacagagtgaaacttttagcttgtaagtgattcctagctaagtgtcctgctagttcatgttctctctatgagtgggaggtgcagtctgtcctgt |
15274446 |
T |
 |
| Q |
263 |
gttgg |
267 |
Q |
| |
|
||||| |
|
|
| T |
15274447 |
gttgg |
15274451 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 12834167 - 12833951
Alignment:
| Q |
1 |
atccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttattt |
100 |
Q |
| |
|
|||||| | ||| |||||| |||||||||||||||||| || |||||||||||||| |||||||||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
12834167 |
atccctatgggtctagcccagcagttcctttcctttacaggtttaggtagggggaatcgtgttagaataggtttatttattgtttggcatgctgttattt |
12834068 |
T |
 |
| Q |
101 |
ggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaa-actcttagcttggaagtggt |
199 |
Q |
| |
|
|||||||||||| | ||||||||| ||| |||||||| ||||| ||| || ||||||| |||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
12834067 |
ggaccatctggatgttccggaatgatcttattttttctagtggtacccttaatgaggggcctgtggtggatagagcctctactcttagcttgggagtggt |
12833968 |
T |
 |
| Q |
200 |
tcctggctaagtgccct |
216 |
Q |
| |
|
||||| |||||| |||| |
|
|
| T |
12833967 |
tcctgactaagtaccct |
12833951 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 90 - 251
Target Start/End: Original strand, 51921 - 52082
Alignment:
| Q |
90 |
tgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagct |
189 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||| | ||||||||||| ||| || |||| | || |||||||| |||| |||||||||||| |
|
|
| T |
51921 |
tgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctggtggctccctcagagaggagcctatggtggatcgagctaaactcttagct |
52020 |
T |
 |
| Q |
190 |
tggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgca |
251 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| ||| | || |||| |||||||||||| |
|
|
| T |
52021 |
tggaagtggttcctggctaagtgtcttgctagttcttgcactttatatgagtgggaggtgca |
52082 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 9557533 - 9557358
Alignment:
| Q |
93 |
tgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgg |
192 |
Q |
| |
|
||||||||||||||||| ||| ||||| ||||||||| ||| | ||||||| ||||| |||| |||| ||||||||| | || ||| ||||||||||| |
|
|
| T |
9557533 |
tgttatttggaccatcttgacgtcccgaaatgaccttatttctgctggtggcacccattgtgataggtcggtggtggatggggcaaaattcttagcttgg |
9557434 |
T |
 |
| Q |
193 |
aagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggc |
268 |
Q |
| |
|
||||| |||||| ||||||| |||||||| | |||| | | | ||| |||||||||||||||||||||||| |||| |
|
|
| T |
9557433 |
aagtgattcctgactaagtgtcctgctagctcctgcacttatcatgagtgggaggtgcagcccgtcctttgctggc |
9557358 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 9755759 - 9755699
Alignment:
| Q |
163 |
gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt |
223 |
Q |
| |
|
|||||||| | || ||||||||||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
9755759 |
gtggtggacaaagtgaaactcttagtttggaagtggtttcgggctaagtgccctgctagtt |
9755699 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 19290215 - 19290332
Alignment:
| Q |
81 |
tgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaa |
180 |
Q |
| |
|
|||||| | |||||||||||| || |||||||| ||||||||||||||| | ||| |||||| | || ||| || | || |||||||||||| ||| |
|
|
| T |
19290215 |
tgtttgacatgctgttatttgaacaatctggacatcccggaatgaccttatgtttggtggtggcgtacagcgtgtggagcctttggtggatagagaaaaa |
19290314 |
T |
 |
| Q |
181 |
ctcttagcttggaagtgg |
198 |
Q |
| |
|
||||||| ||| |||||| |
|
|
| T |
19290315 |
ctcttagtttgaaagtgg |
19290332 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 68 - 266
Target Start/End: Original strand, 43411419 - 43411617
Alignment:
| Q |
68 |
taggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggt |
167 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||||||||||||||| |||| |||||||||||| |||||||||||||| | | ||| || |||| |||| |
|
|
| T |
43411419 |
taggtttacttctggtttgacgtgctattatttggaccatctggacgtcccagaatgaccttgtgttttctggtggtgctcgtggtgtggagtctttggt |
43411518 |
T |
 |
| Q |
168 |
ggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttg |
266 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||| |||||||| | |||| | | | ||| ||||||||||||||||||||||||||| |
|
|
| T |
43411519 |
ggatagagcgaaactcttagcttgaaagtgtttcctggctaagtgtcctgctagctcctgcacttatcatgagtgggaggtgcagcccgtcctttgttg |
43411617 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 258
Target Start/End: Original strand, 10994301 - 10994527
Alignment:
| Q |
32 |
cctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgt |
131 |
Q |
| |
|
|||||||| | |||||| |||||| | | ||||| ||||||| ||| |||||||| ||||||||| |||||||| ||| |||| ||||||||| | |
|
|
| T |
10994301 |
cctttacgtgtttaggtggggggaggagagttaggttaggtttgctttttgtttggcatgctgttatctggaccatttgggagacccgtaatgaccttat |
10994400 |
T |
 |
| Q |
132 |
tttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctcc |
231 |
Q |
| |
|
||| ||||||||| | ||||| | | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | || |
|
|
| T |
10994401 |
ctttgctggtggtgttctccgtgagaagccagtggtggatagagttaaactcttagcttggaagtggttcctggctaagtgccctgctagttcccgttct |
10994500 |
T |
 |
| Q |
232 |
ttttatgggtgggaggtgcagcccgtc |
258 |
Q |
| |
|
| |||| ||||||||||||||||||| |
|
|
| T |
10994501 |
ctctatgagtgggaggtgcagcccgtc |
10994527 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 29682553 - 29682758
Alignment:
| Q |
14 |
tagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggac |
113 |
Q |
| |
|
|||||| |||||| | | ||||||||||||| || ||||||| | | ||||| ||||||| ||| |||||||| || ||||||||||||||| ||| | |
|
|
| T |
29682553 |
tagcccagcagtttcatgcctttacggggttggg-agggggaggagagttaggttaggtttgcttcttgtttggcatgttgttatttggaccatttgggc |
29682651 |
T |
 |
| Q |
114 |
ttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgc |
213 |
Q |
| |
|
||||||||||||||| | ||| |||||||||| | | || | | ||||||||||||| ||||||||||||| ||||||||||| ||||||| | |
|
|
| T |
29682652 |
gtcccggaatgaccttatctttgctggtggtgctctccgagatgagctagtggtggatagagttaaactcttagcttagaagtggttccaggctaagcac |
29682751 |
T |
 |
| Q |
214 |
cctgcta |
220 |
Q |
| |
|
||||||| |
|
|
| T |
29682752 |
cctgcta |
29682758 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 41074658 - 41074545
Alignment:
| Q |
161 |
ctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcct |
260 |
Q |
| |
|
|||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| | || | | ||| ||| |||| ||||||||||||| || |
|
|
| T |
41074658 |
ctgtggtggacaaagcgaaactcttagcttgaaagtggttcctggctaagtgccctgctag-tccttcacttttcatgagtggaaggtgcagcccgttct |
41074560 |
T |
 |
| Q |
261 |
ttgttggcaacggta |
275 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
41074559 |
gtgctggcatcggta |
41074545 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 328 - 462
Target Start/End: Original strand, 42032899 - 42033031
Alignment:
| Q |
328 |
ctttgcctctacctatccagcctgtcttcttgggtctctccttgcgcttttccttgctgggtgtgctggttgtgacggggccctttccgggggccatttt |
427 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||||||||||| |
|
|
| T |
42032899 |
ctttgcctctacctttccagcctgtcttcttg--tctctccttgcgcttttccttgttgggtgcgctggttgtggtggggcccttttcgggggccatttt |
42032996 |
T |
 |
| Q |
428 |
ggtgttggttttcttcttctttttcttggtgtgtt |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
42032997 |
ggtgttggttttcttcttctttttcttggtgtgtt |
42033031 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 42032730 - 42032845
Alignment:
| Q |
160 |
tctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcc |
259 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| ||||||| |
|
|
| T |
42032730 |
tctgtggtgaatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctacttcctgctccttttatgagtgggaggtgcaacccgtcc |
42032829 |
T |
 |
| Q |
260 |
tttgttggcaacggta |
275 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
42032830 |
tttgttggcaacggta |
42032845 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 82 - 269
Target Start/End: Original strand, 41926939 - 41927126
Alignment:
| Q |
82 |
gtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaac |
181 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||| | | | |||| | ||||||||||||||||||| | |
|
|
| T |
41926939 |
gtttggcatgctgttatttggaccatttggacttctcggaatgatcttattttttctggtggtgctcttcgagaggagcctgtggtggatagagcgaatc |
41927038 |
T |
 |
| Q |
182 |
tcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| | || ||||| || |||| ||||||| |||| ||| |||| |||||||| |
|
|
| T |
41927039 |
tcttagcttggaagtggttcctggctaagtgccgtgcaaattcctgctttttctatgagtgggagatgcaccccttcctgtgttggca |
41927126 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 42241471 - 42241217
Alignment:
| Q |
14 |
tagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggac |
113 |
Q |
| |
|
|||||| |||||| | ||||| ||||| |||||| |||||||| | |||||| ||||||| || | |||||| | |||||||||||| ||||||||||| |
|
|
| T |
42241471 |
tagcccagcagtttccgtccttcacgggattaggtggggggaagagcgttagactaggtttgctcattgtttgacatgctgttatttgaaccatctggac |
42241372 |
T |
 |
| Q |
114 |
ttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgc |
213 |
Q |
| |
|
||| | || |||||| ||||| ||||||| |||| |||||| | || ||||||||| ||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
42241371 |
atccagaaacgaccttattttt-ctggtggcgccctccgtgaggagcctttggtggataaagcgaaactcttagcttggaagtggttcctggcgaagcgc |
42241273 |
T |
 |
| Q |
214 |
cctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggca |
269 |
Q |
| |
|
|| |||||| |||| | | || |||||||||||| |||||||| || ||||| |
|
|
| T |
42241272 |
tctactagttcctgcacttaccttgagtgggaggtgcaacccgtcctgtgctggca |
42241217 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 37 - 228
Target Start/End: Complemental strand, 4040540 - 4040348
Alignment:
| Q |
37 |
acggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgtttttt |
136 |
Q |
| |
|
||||| |||||| |||||||| ||||||| ||||||| || | |||||||| || |||||| |||||||||||||| ||| | || |||||| |||||| |
|
|
| T |
4040540 |
acgggattaggtggggggaagagtgttaggctaggtttgctcattgtttggcatgttgttatctggaccatctggacatccagaaacgaccttatttttt |
4040441 |
T |
 |
| Q |
137 |
ctggtggtgcccatagtgaggggtctgtggt-ggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgc |
228 |
Q |
| |
|
||||||| || | | |||| |||| |||| |||||||||||||| |||||||||||||| ||||||||| ||| | ||||||||| |||| |
|
|
| T |
4040440 |
ctggtggcacctttcgagaggagtctttggtgggatagagcgaaacccttagcttggaagtagttcctggcgaagcgttctgctagttcctgc |
4040348 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 265
Target Start/End: Original strand, 24604742 - 24604939
Alignment:
| Q |
68 |
taggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggt |
167 |
Q |
| |
|
||||||| ||| |||||||| || ||| ||||| ||||| ||||| || |||||||||| ||||| |||||||| ||| | |||| | ||||| |
|
|
| T |
24604742 |
taggtttgcttcttgtttggcatgatgtcatttgtaccatttggacgtctaggaatgacctgatttttgctggtggtaccctccgagaggagctggtggt |
24604841 |
T |
 |
| Q |
168 |
ggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgtt |
265 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |||||||||| ||||||||||| | ||| | | ||| |||||||||||||||| |||| |||| |
|
|
| T |
24604842 |
ggatagagcgaaactcttagattgaaagtggttcttggctaagtggcctgctagttttttctcttatcatgagtgggaggtgcagcccatcctatgtt |
24604939 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 152 - 269
Target Start/End: Complemental strand, 34152124 - 34152007
Alignment:
| Q |
152 |
gtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgca |
251 |
Q |
| |
|
|||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||| | ||| ||| |||||||||||| |
|
|
| T |
34152124 |
gtgaggagcctgttgtggatagagctaaactcttagcttggaagtggttcctggctaagcgccctagcagttcctgcacttttcatgagtgggaggtgca |
34152025 |
T |
 |
| Q |
252 |
gcccgtcctttgttggca |
269 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
34152024 |
acccatcctttgttggca |
34152007 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 32074017 - 32073929
Alignment:
| Q |
172 |
agagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcct |
260 |
Q |
| |
|
|||| ||||||||||| ||||||||| || ||||||||||| ||| |||||| |||||||||||||| |||||||| |||||||||||| |
|
|
| T |
32074017 |
agagtgaaactcttagtttggaagtgatttctggctaagtgtcctactagttcctgctccttttatgagtgggaggcgcagcccgtcct |
32073929 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 81 - 212
Target Start/End: Complemental strand, 7656977 - 7656846
Alignment:
| Q |
81 |
tgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaa |
180 |
Q |
| |
|
|||||| | |||||| |||| |||||||| || |||||||||||||| |||||||| ||||| | | |||||| | ||||||||||||||| |||| |
|
|
| T |
7656977 |
tgtttgacatgctgtcatttagaccatctaaacgtcccggaatgacctagttttttcaggtggcgtactccgtgaggagcctgtggtggatagagtgaaa |
7656878 |
T |
 |
| Q |
181 |
ctcttagcttggaagtggttcctggctaagtg |
212 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| |
|
|
| T |
7656877 |
ctcttaatttggaagtggttcctaactaagtg |
7656846 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 265
Target Start/End: Complemental strand, 2074897 - 2074795
Alignment:
| Q |
163 |
gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtccttt |
262 |
Q |
| |
|
|||||||||| || |||||||||| || ||||| ||||| |||||||||||||||||||| ||| || | |||| |||||||||||| |||||||| | |
|
|
| T |
2074897 |
gtggtggatatagttaaactcttagttttgaagttgttccaggctaagtgccctgctagttcctgttctctctatgagtgggaggtgcaacccgtcctgt |
2074798 |
T |
 |
| Q |
263 |
gtt |
265 |
Q |
| |
|
||| |
|
|
| T |
2074797 |
gtt |
2074795 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 36650524 - 36650457
Alignment:
| Q |
163 |
gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctc |
230 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||| ||||||||| | |||||||| |||||| |
|
|
| T |
36650524 |
gtggtggacagagttaaactcttagcttgggagtggttccgggctaagtgtcttgctagttcctgctc |
36650457 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 38492803 - 38492761
Alignment:
| Q |
161 |
ctgtggtggatagagcgaaactcttagcttggaagtggttcct |
203 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
38492803 |
ctgtggtggataaagcgaaactcttagcttgaaagtggttcct |
38492761 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 1762224 - 1762039
Alignment:
| Q |
25 |
ttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatg |
124 |
Q |
| |
|
||||||||||||| | | |||| |||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||| ||| |||||| |
|
|
| T |
1762224 |
ttcctttcctttatgagtttagatagggggaagcgtgttagaatatgtttacttcttgtttggcatgttgttatttggaccatctggacgtcctggaatg |
1762125 |
T |
 |
| Q |
125 |
accttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaag |
210 |
Q |
| |
|
| ||| |||||| |||||| | ||||||||||| | | || | ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1762124 |
agcttattttttttggtggcgtccatagtgaggtgcatttgatagatagagcgaaactcttagcttggaagtggttcatggctaag |
1762039 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 257
Target Start/End: Complemental strand, 26982239 - 26982031
Alignment:
| Q |
49 |
agggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgccc |
148 |
Q |
| |
|
||||||||| | ||||| |||||||| ||| ||||||| |||||| |||| |||| | |||||| | ||| ||||| |||| |||||||| ||| |
|
|
| T |
26982239 |
agggggaagagagttaggataggtttgcttctggtttggcatgctgtcatttagaccgttctgacttctagaaataaccttattttctctggtggcaccc |
26982140 |
T |
 |
| Q |
149 |
atagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggt |
248 |
Q |
| |
|
| |||||| | ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||| ||| | ||| ||||||||| |
|
|
| T |
26982139 |
ttcgtgaggagcctgtggtggatagagtaaaactcttagcttggaagtggttcttggctaagtgccctgcaagttcctgcacctatcatgagtgggaggt |
26982040 |
T |
 |
| Q |
249 |
gcagcccgt |
257 |
Q |
| |
|
|||||||| |
|
|
| T |
26982039 |
tcagcccgt |
26982031 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 4778030 - 4778134
Alignment:
| Q |
161 |
ctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcct |
260 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||| |||||| | |||| ||||||||||||||||||||| |
|
|
| T |
4778030 |
ctgtggtggatagagttaaactcttagtttggaagtggttccaggctaggtgccctgctagtccctgctctctctatgagtgggaggtgcagcccgtcct |
4778129 |
T |
 |
| Q |
261 |
ttgtt |
265 |
Q |
| |
|
|||| |
|
|
| T |
4778130 |
gtgtt |
4778134 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 93 - 269
Target Start/End: Original strand, 34213078 - 34213254
Alignment:
| Q |
93 |
tgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgg |
192 |
Q |
| |
|
|||||| |||||||| ||||| |||| || |||||| |||| |||||||| || | |||||| |||| |||||||||| |||||||||||||||| |
|
|
| T |
34213078 |
tgttatatggaccatttggacgtcccaaaacgaccttattttctctggtggcgctctccgtgaggaacctgttgtggatagagtgaaactcttagcttgg |
34213177 |
T |
 |
| Q |
193 |
aagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggca |
269 |
Q |
| |
|
||||||||| |||||||||||| |||||||| ||| | | | | | ||| ||||||||||||||||| |||||||| |
|
|
| T |
34213178 |
aagtggttcatggctaagtgccatgctagttcatgcacttatcacgagtgtgaggtgcagcccgtcctgtgttggca |
34213254 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 163 - 267
Target Start/End: Complemental strand, 2833394 - 2833286
Alignment:
| Q |
163 |
gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctag----tttctgctccttttatgggtgggaggtgcagcccgtc |
258 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| || |||||| | |||| ||||||||||||||||||| |
|
|
| T |
2833394 |
gtggtagatagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagctagttcctgctctctctatgagtgggaggtgcagcccgtc |
2833295 |
T |
 |
| Q |
259 |
ctttgttgg |
267 |
Q |
| |
|
|| |||||| |
|
|
| T |
2833294 |
ctatgttgg |
2833286 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 41640824 - 41640926
Alignment:
| Q |
163 |
gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtccttt |
262 |
Q |
| |
|
|||||||| |||| ||||||||| ||||||||||||| | |||||||||||||||||||| |||||| |||| ||||||||||||||||||||| | |
|
|
| T |
41640824 |
gtggtggacagagttaaactcttaacttggaagtggtttcgggctaagtgccctgctagttcctgctctccctatgagtgggaggtgcagcccgtcctgt |
41640923 |
T |
 |
| Q |
263 |
gtt |
265 |
Q |
| |
|
||| |
|
|
| T |
41640924 |
gtt |
41640926 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 1045466 - 1045406
Alignment:
| Q |
163 |
gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt |
223 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1045466 |
gtggtggatagggttaaactctcagcttggaagtggttcctggctaagtgccctgctagtt |
1045406 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 82 - 275
Target Start/End: Complemental strand, 50655250 - 50655057
Alignment:
| Q |
82 |
gtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaac |
181 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| ||||||||| | ||||||||||| |||| || |||| ||||||| ||||| || |||| |
|
|
| T |
50655250 |
gtttggcatgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctggtggcgccctcagagaggagtctgtgatggatcaggctaaac |
50655151 |
T |
 |
| Q |
182 |
tcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||| || ||| |||||||||||| || |||||||||||||| ||||| |
|
|
| T |
50655150 |
tcttagcttggaagtggttcctggctaagtgtcctgctagttcttgctttttccatgagtgggaggtgcaacctgtcctttgttggcagcggta |
50655057 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 90 - 269
Target Start/End: Complemental strand, 30251565 - 30251386
Alignment:
| Q |
90 |
tgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagct |
189 |
Q |
| |
|
|||||||||||||||||| ||||| ||| | || |||||| |||| |||| ||| || | |||||| ||||||||||||||||| ||||||||| ||| |
|
|
| T |
30251565 |
tgctgttatttggaccatttggacgtcctgaaacgaccttattttctctgttggggctctccgtgaggagtctgtggtggatagagtgaaactcttggct |
30251466 |
T |
 |
| Q |
190 |
tggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggca |
269 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||| ||||| || ||| |||||||||| |||| |||||||| ||||| |
|
|
| T |
30251465 |
tgaaagtggttcctggctaagtgccctggaagttcttgctctgttcatgagtgggaggtgtagccggtcctttgctggca |
30251386 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 275
Target Start/End: Original strand, 19469578 - 19469759
Alignment:
| Q |
93 |
tgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgg |
192 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| || | ||| ||||||| |||||| ||||| | ||||||||||||||| || ||||||||||| |
|
|
| T |
19469578 |
tgttatttggaccatctgaacttcctggaatgacattttatttgctggtggcgcccattctgaggagcatgtggtggatagagcaaagttcttagcttgg |
19469677 |
T |
 |
| Q |
193 |
aagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta |
275 |
Q |
| |
|
||||||||||| | |||||| ||||||||| |||| | | | ||| |||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
19469678 |
aagtggttcctagttaagtg-tctgctagttcctgcacttatcatgagtgggaggtgtagcctgtcctttgttggcatcggta |
19469759 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 267
Target Start/End: Complemental strand, 45068359 - 45068115
Alignment:
| Q |
23 |
agttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaa |
122 |
Q |
| |
|
||||||| || |||||||| |||||| |||||||| | || || ||||||| ||| |||||| | || | ||||||||| ||||||||| |||| ||| |
|
|
| T |
45068359 |
agttcctgtcttttacgggtttaggtggggggaagagagtgaggttaggtttgcttcttgtttgacatgtttttatttggaacatctggacgtccctgaa |
45068260 |
T |
 |
| Q |
123 |
tgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagt |
222 |
Q |
| |
|
|||||| | |||||| || | | | | ||||| | |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45068259 |
cgaccttttgttttctagttgcactcttcatgaggagcctgtagtggatagagctaaactcttagcttggaagtggttcctggctaagtgccctggcagt |
45068160 |
T |
 |
| Q |
223 |
ttctgctccttttatgggtgggaggtgcagcccgtcctttgttgg |
267 |
Q |
| |
|
| || | | | | ||| | |||||||||| ||||||||||||||| |
|
|
| T |
45068159 |
tcctacacttatcatgagggggaggtgcaacccgtcctttgttgg |
45068115 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 103 - 275
Target Start/End: Complemental strand, 23012495 - 23012323
Alignment:
| Q |
103 |
accatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcc |
202 |
Q |
| |
|
||||| ||||| || ||||| |||||| |||| ||||||||||| | |||||| | | ||||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
23012495 |
accatttggacgtctcggaacgaccttattttctctggtggtgctctctgtgaggagcccgtggtggatagagtgaaactcttagtttggaattggttca |
23012396 |
T |
 |
| Q |
203 |
tggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta |
275 |
Q |
| |
|
|||||||||| ||||||||||||| | | | ||| ||||||||||||| |||||| ||||| || ||||| |
|
|
| T |
23012395 |
tggctaagtgttgtgctagtttctgcacttatcatgaatgggaggtgcagcacgtcctgtgttgacatcggta |
23012323 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 24 - 268
Target Start/End: Complemental strand, 12843164 - 12842920
Alignment:
| Q |
24 |
gttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaat |
123 |
Q |
| |
|
|||||||| |||| ||| ||||| |||| ||| | ||||| |||||||| ||| ||||||| | |||||| |||||||| ||||||||||||||| |
|
|
| T |
12843164 |
gttcctttattttatgggcttaggagggggaaagagagttaggataggtttgcttctggtttggcattttgttatctggaccatttggacttcccggaat |
12843065 |
T |
 |
| Q |
124 |
gaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt |
223 |
Q |
| |
|
|||||| |||||||||| | |||| || |||| | ||||||| ||||| ||||||||| |||||||||||||||| |||||| | ||||||| |
|
|
| T |
12843064 |
gaccttattttttctggcgacgccctcagagaggatcttatggtggagagagctaaactcttactttggaagtggttcctgactaagtatcatgctagtc |
12842965 |
T |
 |
| Q |
224 |
tctgctccttttatgggtgggaggtgcagcccgtcctttgttggc |
268 |
Q |
| |
|
|||||||| ||| || ||||||||| ||||||| ||||||| |
|
|
| T |
12842964 |
cctgctcctattaccagttagaggtgcagtccgtcctgtgttggc |
12842920 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 24065196 - 24065097
Alignment:
| Q |
161 |
ctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcct |
260 |
Q |
| |
|
||||||||||||||| |||||||||| | |||||||||||| ||||||||| ||||||||||| ||| | | ||||| |||||||| || |||||||| |
|
|
| T |
24065196 |
ctgtggtggatagagtgaaactcttaacctggaagtggttcatggctaagtaccctgctagttcctgttgttattatgaatgggaggtacaacccgtcct |
24065097 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 223
Target Start/End: Complemental strand, 48309846 - 48309657
Alignment:
| Q |
34 |
tttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttt |
133 |
Q |
| |
|
||||| |||||||| |||||||| | ||||| ||||||| ||| |||||||| | ||||||||||||||| || | |||| |||||||||| | | |
|
|
| T |
48309846 |
tttacagggttaggaggggggaagagagttaggttaggtttgcttcttgtttggcatattgttatttggaccatttgagcatcccagaatgaccttatct |
48309747 |
T |
 |
| Q |
134 |
tttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt |
223 |
Q |
| |
|
|| ||||||| | | |||| | | ||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
48309746 |
ttgctggtggcttactccgagaggagccagtggtggatagagtgaaactcttagcttggaagtcgttccgggctaagtttcctgctagtt |
48309657 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 4866794 - 4866838
Alignment:
| Q |
178 |
aaactcttagcttggaagtggttcctggctaagtgccctgctagt |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4866794 |
aaactcttagcttggaagtggttcctggctaagtgccttgctagt |
4866838 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 44616887 - 44616698
Alignment:
| Q |
35 |
ttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttg---- |
130 |
Q |
| |
|
||||||| |||||| |||||||||| |||||| ||||||| || |||| || || ||||||||||| ||||||||| | | ||||||||||| |
|
|
| T |
44616887 |
ttacgggcttaggtggggggaagcgagttagattaggtttgctcctggttttgcctgttgttatttggatcatctggacgtgctggaatgacctttattt |
44616788 |
T |
 |
| Q |
131 |
ttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgcta |
220 |
Q |
| |
|
|||||||||| | |||| | |||||| | || ||| |||||||| ||| ||||||||||| |||||| || |||||||| ||| ||||| |
|
|
| T |
44616787 |
ttttttctggaagcgcccttcgtgaggagcctatggcggatagagagaagctcttagcttgtaagtggctcatggctaagggccttgcta |
44616698 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 41650444 - 41650583
Alignment:
| Q |
82 |
gtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaac |
181 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||| |||| |||||| | ||||||||||||| || | | | || | || |||||||||||||||||||| |
|
|
| T |
41650444 |
gtttggcatgctgtcatttggaccatttggacgtcccaaaatgacttgattttttctggtggcgctcttggagaagtgtatgtggtggatagagcgaaac |
41650543 |
T |
 |
| Q |
182 |
tcttagcttggaagtggttcctggctaagtgccctgctag |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41650544 |
tcttagcttggaagtggttcctggctaagtgctctgctag |
41650583 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 93 - 262
Target Start/End: Complemental strand, 27639613 - 27639444
Alignment:
| Q |
93 |
tgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgg |
192 |
Q |
| |
|
||||||||||||||||||||||| | |||||| || | ||| ||||||| ||||||||||| | |||||||||||||||| ||| ||||||||||| |
|
|
| T |
27639613 |
tgttatttggaccatctggacttacataaatgactttatgtttgctggtggcacccatagtgagcagactgtggtggatagagcaaaattcttagcttgg |
27639514 |
T |
 |
| Q |
193 |
aagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtccttt |
262 |
Q |
| |
|
||||||||| ||||||| || |||||||||| ||| | | | ||| || ||||||||| |||||||||| |
|
|
| T |
27639513 |
aagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtaggaggtgcaacccgtccttt |
27639444 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 3465528 - 3465354
Alignment:
| Q |
31 |
tcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttg |
130 |
Q |
| |
|
||||| ||||| |||||| |||||||| ||||||| |||||||||| | ||||| | || ||||||||||||||||| ||| ||| | || |||||| |
|
|
| T |
3465528 |
tccttcacgggattaggt-gggggaagagtgttaggctaggtttactcatcgtttgacatgttgttatttggaccatctagacatccagaaacgacctta |
3465430 |
T |
 |
| Q |
131 |
ttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggc |
206 |
Q |
| |
|
||||||||||||| || | | |||| |||| |||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
3465429 |
ttttttctggtggcacctttcgagaggagtctttggtggatagagcgaaactcttagcttggaagtgtttcttggc |
3465354 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 167 - 269
Target Start/End: Original strand, 33861926 - 33862027
Alignment:
| Q |
167 |
tggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttg |
266 |
Q |
| |
|
||||||||| |||||| || |||||||||||| ||| |||||||||||||| ||||| |||||| ||| ||| |||||||||| ||||||||||||| || |
|
|
| T |
33861926 |
tggatagagtgaaact-ttggcttggaagtggctcccggctaagtgccctggtagttcctgctcttttcatgagtgggaggtgtagcccgtcctttgctg |
33862024 |
T |
 |
| Q |
267 |
gca |
269 |
Q |
| |
|
||| |
|
|
| T |
33862025 |
gca |
33862027 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 16154664 - 16154585
Alignment:
| Q |
34 |
tttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggac |
113 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||| ||||||| ||| | |||||| |||| ||||||||||||| ||||| |
|
|
| T |
16154664 |
tttacggggttaggaagggggaagagagttaggttaggtttgcttcttatttggcatgctattatttggaccatttggac |
16154585 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 39774290 - 39774337
Alignment:
| Q |
82 |
gtttggcgtgctgttatttggaccatctggacttcccggaatgacctt |
129 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| |||||||| |||||| |
|
|
| T |
39774290 |
gtttggcgttctgttatttggatcatctggacgtcccggaacgacctt |
39774337 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 18521 - 18408
Alignment:
| Q |
162 |
tgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctt |
261 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| ||||| ||| |||||||||||||||||||| |||| | | | ||| |||||||||||| ||||| || |
|
|
| T |
18521 |
tgtggtggatagagcgaaactcatagtttgaaagtgattctgggctaagtgccctgctagttcctgcacttatcatgagtgggaggtgcaacccgttctg |
18422 |
T |
 |
| Q |
262 |
tgttggcaacggta |
275 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
18421 |
tgttggcagcggta |
18408 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 83311 - 83252
Alignment:
| Q |
164 |
tggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt |
223 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| || | ||||| |||||||||| |
|
|
| T |
83311 |
tggtggataaagtcaaactcttagcttggaagtggttcatgccgaagtgtcctgctagtt |
83252 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University