View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6713_low_4 (Length: 476)

Name: NF6713_low_4
Description: NF6713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6713_low_4
NF6713_low_4
[»] chr7 (9 HSPs)
chr7 (1-275)||(46028422-46028696)
chr7 (328-464)||(46028233-46028369)
chr7 (93-269)||(23176890-23177065)
chr7 (161-275)||(40188169-40188283)
chr7 (164-253)||(12258376-12258465)
chr7 (81-265)||(33743390-33743574)
chr7 (152-223)||(33888605-33888676)
chr7 (337-433)||(19513534-19513631)
chr7 (152-223)||(26557858-26557929)
[»] chr1 (11 HSPs)
chr1 (1-275)||(52372498-52372782)
chr1 (81-275)||(25410555-25410749)
chr1 (32-265)||(51871072-51871305)
chr1 (94-275)||(44503937-44504118)
chr1 (93-275)||(9644301-9644483)
chr1 (152-275)||(40799640-40799763)
chr1 (152-223)||(21926608-21926678)
chr1 (164-254)||(13297595-13297685)
chr1 (328-392)||(52372835-52372900)
chr1 (178-258)||(3227649-3227729)
chr1 (163-267)||(15274347-15274451)
[»] chr6 (5 HSPs)
chr6 (1-216)||(12833951-12834167)
chr6 (90-251)||(51921-52082)
chr6 (93-268)||(9557358-9557533)
chr6 (163-223)||(9755699-9755759)
chr6 (81-198)||(19290215-19290332)
[»] chr2 (4 HSPs)
chr2 (68-266)||(43411419-43411617)
chr2 (32-258)||(10994301-10994527)
chr2 (14-220)||(29682553-29682758)
chr2 (161-275)||(41074545-41074658)
[»] chr8 (12 HSPs)
chr8 (328-462)||(42032899-42033031)
chr8 (160-275)||(42032730-42032845)
chr8 (82-269)||(41926939-41927126)
chr8 (14-269)||(42241217-42241471)
chr8 (37-228)||(4040348-4040540)
chr8 (68-265)||(24604742-24604939)
chr8 (152-269)||(34152007-34152124)
chr8 (172-260)||(32073929-32074017)
chr8 (81-212)||(7656846-7656977)
chr8 (163-265)||(2074795-2074897)
chr8 (163-230)||(36650457-36650524)
chr8 (161-203)||(38492761-38492803)
[»] chr3 (7 HSPs)
chr3 (25-210)||(1762039-1762224)
chr3 (49-257)||(26982031-26982239)
chr3 (161-265)||(4778030-4778134)
chr3 (93-269)||(34213078-34213254)
chr3 (163-267)||(2833286-2833394)
chr3 (163-265)||(41640824-41640926)
chr3 (163-223)||(1045406-1045466)
[»] chr4 (10 HSPs)
chr4 (82-275)||(50655057-50655250)
chr4 (90-269)||(30251386-30251565)
chr4 (93-275)||(19469578-19469759)
chr4 (23-267)||(45068115-45068359)
chr4 (103-275)||(23012323-23012495)
chr4 (24-268)||(12842920-12843164)
chr4 (161-260)||(24065097-24065196)
chr4 (34-223)||(48309657-48309846)
chr4 (178-222)||(4866794-4866838)
chr4 (35-220)||(44616698-44616887)
[»] chr5 (6 HSPs)
chr5 (82-221)||(41650444-41650583)
chr5 (93-262)||(27639444-27639613)
chr5 (31-206)||(3465354-3465528)
chr5 (167-269)||(33861926-33862027)
chr5 (34-113)||(16154585-16154664)
chr5 (82-129)||(39774290-39774337)
[»] scaffold0329 (1 HSPs)
scaffold0329 (162-275)||(18408-18521)
[»] scaffold0042 (1 HSPs)
scaffold0042 (164-223)||(83252-83311)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 46028696 - 46028422
Alignment:
1 atccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttattt 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
46028696 atccctttaggtttagcccgacagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcatgctgttattt 46028597  T
101 ggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggtt 200  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46028596 ggaccatctgaacttcccggaatgaccttgttttttctgatggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggtt 46028497  T
201 cctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta 275  Q
    |||||||||||| ||||||||||||| ||||||||||  |||||||||||||||||| |||||||||||||||||    
46028496 cctggctaagtgtcctgctagtttctactccttttataagtgggaggtgcagcccgttctttgttggcaacggta 46028422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 328 - 464
Target Start/End: Complemental strand, 46028369 - 46028233
Alignment:
328 ctttgcctctacctatccagcctgtcttcttgggtctctccttgcgcttttccttgctgggtgtgctggttgtgacggggccctttccgggggccatttt 427  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
46028369 ctttgcctctacctatccaacttgtcttcttgggtctctccttgcgcttttccttgctgggtgtgctggttgtgacggaaccctttccgggggccatttt 46028270  T
428 ggtgttggttttcttcttctttttcttggtgtgttat 464  Q
    |||||||||||||||||||||||||||||||||||||    
46028269 ggtgttggttttcttcttctttttcttggtgtgttat 46028233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 23177065 - 23176890
Alignment:
93 tgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgg 192  Q
    ||||||||||||||||||||| || ||||| | |||| |||| ||| ||||  | |   |||||| | |||||||| |||||| ||||||||||||||||    
23177065 tgttatttggaccatctggacgtctcggaacg-ccttattttctctagtggcactctccgtgaggagcctgtggtgtatagagtgaaactcttagcttgg 23176967  T
193 aagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggca 269  Q
    ||| ||||||| || ||||| | ||||||||  ||| | | | ||| || |||||||||||||||||| ||||||||    
23176966 aagcggttccttgccaagtgtcatgctagttcatgcacttatcatgagttggaggtgcagcccgtcctatgttggca 23176890  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 40188283 - 40188169
Alignment:
161 ctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcct 260  Q
    |||||||||||| ||| |||||| ||||||||||||||||| || ||||||||||||||||||  ||| | | | ||| || ||||||||||| |||| |    
40188283 ctgtggtggataaagcaaaactcatagcttggaagtggttcttgcctaagtgccctgctagttcttgcacttatcatgagtaggaggtgcagctcgtctt 40188184  T
261 ttgttggcaacggta 275  Q
     |||||||| |||||    
40188183 gtgttggcagcggta 40188169  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 12258376 - 12258465
Alignment:
164 tggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagc 253  Q
    ||||||||||||  |||||||||||||| |||||||||||||||||||| ||||| |||  ||||||  | |||| ||||||||||||||    
12258376 tggtggatagagttaaactcttagcttgaaagtggttcctggctaagtgtcctgccagtccctgctctctctatgagtgggaggtgcagc 12258465  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 265
Target Start/End: Original strand, 33743390 - 33743574
Alignment:
81 tgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaa 180  Q
    |||||||| |||||||||||||||||| ||| | ||||| || |||||| | ||| |||||||    |   | |||| | | |||||||| ||||  |||    
33743390 tgtttggcatgctgttatttggaccatttgggcgtcccgaaacgaccttatctttgctggtggcttactccgagaggagccagtggtggacagagttaaa 33743489  T
181 ctcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgtt 265  Q
     |||||||||| ||||||||| ||||||||||||||||||||  ||| ||  | |||| |||||||||||| |||||||| ||||    
33743490 atcttagcttgaaagtggttcttggctaagtgccctgctagtccctgttctctctatgagtgggaggtgcaacccgtcctgtgtt 33743574  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 33888605 - 33888676
Alignment:
152 gtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt 223  Q
    |||||| ||| ||||||||||||| | ||||||||| |||||||||||| | ||||||||||||||||||||    
33888605 gtgaggagtcagtggtggatagagtggaactcttagattggaagtggtttcgggctaagtgccctgctagtt 33888676  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 433
Target Start/End: Original strand, 19513534 - 19513631
Alignment:
337 tacctatccagcctgtcttcttgggtctctccttgcgc-ttttccttgctgggtgtgctggttgtgacggggccctttccgggggccattttggtgtt 433  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||| |||||| ||| | | || |||| ||||||| ||||||| ||| ||||||    
19513534 tacctatccgacctgtcttcttgggtctctccttgcgctttttccttgttgggtgcgcttggtatggcgggtccctttctgggggccttttgggtgtt 19513631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 26557929 - 26557858
Alignment:
152 gtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt 223  Q
    |||||| | |||||||||| ||||  ||||| ||||||||| ||||| ||||||||||||||||||||||||    
26557929 gtgaggagcctgtggtggacagagttaaacttttagcttggtagtggctcctggctaagtgccctgctagtt 26557858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 52372498 - 52372782
Alignment:
1 atccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttattt 100  Q
    |||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||| |||| ||||||    
52372498 atccctataggtttagcctgacagttcctttcctttaccgggttaggtagggggaagcgtgttagaatatgtttacttattgtttggcatgctattattt 52372597  T
101 ggaccatctggacttcccggaatgaccttgtttt----------ttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagctt 190  Q
    ||||||||||||| ||||||||||||||| ||||          ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
52372598 ggaccatctggacctcccggaatgacctttttttcttcttcttcttctggtggcgcccatagtgaggggtctgtggtggatagagcgaaactcttagctt 52372697  T
191 ggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta 275  Q
     ||||||||||||||||| |||||||||||||| |||||| ||||||| |||||||||||| ||| ||||||||||||| |||||    
52372698 agaagtggttcctggctaggtgccctgctagttcctgctctttttatgagtgggaggtgcaacccatcctttgttggcagcggta 52372782  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 81 - 275
Target Start/End: Complemental strand, 25410749 - 25410555
Alignment:
81 tgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaa 180  Q
    |||||||| |||||||||||| ||||||| |||||| |  | ||| ||| |||||| ||||||||| | | | ||||   ||||| ||||||||| ||||    
25410749 tgtttggcatgctgttatttgaaccatctagacttctcatagtgatcttattttttttggtggtgctcttcgagaggaacctgtgatggatagagtgaaa 25410650  T
181 ctcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta 275  Q
    ||||||||||||||||||||||||||||||| || |||||||| |||||| || |||| ||||||||||||||||||| | ||||| ||||||||    
25410649 ctcttagcttggaagtggttcctggctaagtaccttgctagttcctgctctttctatgagtgggaggtgcagcccgtcttgtgttgccaacggta 25410555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 32 - 265
Target Start/End: Original strand, 51871072 - 51871305
Alignment:
32 cctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgt 131  Q
    |||||||||| |||||| |||||| | | |||||  ||||||| |||  |||||||| ||||||||| |||||||| |||||  |||| ||||||||| |    
51871072 cctttacgggtttaggtggggggacgagagttaggttaggtttgcttcttgtttggcatgctgttatctggaccatttggacgacccgaaatgaccttat 51871171  T
132 tttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctcc 231  Q
     |||  || |||||  |   |||||| | | ||||||||||||   ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||     
51871172 ctttgttgttggtgttctccgtgaggagccagtggtggatagaattaaactcttagcttggaagtggttcctgactaagtgccctgctagttcctgttct 51871271  T
232 ttttatgggtgggaggtgcagcccgtcctttgtt 265  Q
     | |||| ||||||||||||||||||||| ||||    
51871272 ctctatgagtgggaggtgcagcccgtcctgtgtt 51871305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 94 - 275
Target Start/End: Complemental strand, 44504118 - 44503937
Alignment:
94 gttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgga 193  Q
    |||||||||||||| ||||| ||  |||| |||||  |||| |||||||| || | | |||||| | |||||||||||| || ||| |||||||||||||    
44504118 gttatttggaccatttggacgtcttggaacgacctcattttctctggtggcgctcttcgtgaggagcctgtggtggataaagtgaagctcttagcttgga 44504019  T
194 agtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta 275  Q
    |||||||| || ||||||| | || ||||| |||||| ||| ||| |||||||||||||| ||||||||| ||||| |||||    
44504018 agtggttcatgactaagtgtcgtggtagttcctgctcttttcatgagtgggaggtgcagctcgtcctttgctggcaccggta 44503937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 93 - 275
Target Start/End: Original strand, 9644301 - 9644483
Alignment:
93 tgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgg 192  Q
    ||||||||||||||||||||  |||||||| |||||| | || ||||||||  | |   |||||| | || |||||||||||||||||||||| | ||||    
9644301 tgttatttggaccatctggatgtcccggaacgaccttatcttctctggtggctctctccgtgaggagcctatggtggatagagcgaaactcttgggttgg 9644400  T
193 aagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta 275  Q
    ||||||||||| |||||||| ||| ||||||  ||||||||| |||  |||||||| || | ||||||||| ||||| |||||    
9644401 aagtggttcctagctaagtgtcctactagttcttgctcctttcatgaatgggaggtacatctcgtcctttgctggcatcggta 9644483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 152 - 275
Target Start/End: Original strand, 40799640 - 40799763
Alignment:
152 gtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgca 251  Q
    |||||| | ||||||||||||||| ||||||||| ||||| |||| |||||| |||||||||  ||||||||  ||||| ||| ||| ||||||||||||    
40799640 gtgaggagcctgtggtggatagagtgaaactcttggcttgaaagttgttcctagctaagtgcattgctagttcttgctcttttcatgagtgggaggtgca 40799739  T
252 gcccgtcctttgttggcaacggta 275  Q
    || ||||||||| ||||| |||||    
40799740 gctcgtcctttgctggcatcggta 40799763  T

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Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 21926608 - 21926678
Alignment:
152 gtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt 223  Q
    |||||| ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||    
21926608 gtgaggagtctgtggtggatagagtgaaactcttagcctggaagtggtt-ctggctaagtgccctgctagtt 21926678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 254
Target Start/End: Original strand, 13297595 - 13297685
Alignment:
164 tggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcc 254  Q
    |||||||||||| ||||||||||||||| || |||||| |||||||||| |||||||||| |||| | | | ||| |||||||||||||||    
13297595 tggtggatagagtgaaactcttagcttgaaattggttcatggctaagtgtcctgctagttcctgcacttatcatgagtgggaggtgcagcc 13297685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 328 - 392
Target Start/End: Original strand, 52372835 - 52372900
Alignment:
328 ctttgcctctacctatccagcctgtcttcttgggtctctccttgcgc-ttttccttgctgggtgtg 392  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||| ||||    
52372835 ctttgcctctacctctccggcctgtcttcttgggtctctccttgcgctttttccttgctggatgtg 52372900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 3227729 - 3227649
Alignment:
178 aaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtc 258  Q
    |||||||||||||| ||||| ||||||| |||||||||||||||| |||| ||  | |||| |||||| ||||| ||||||    
3227729 aaactcttagcttgaaagtgattcctggttaagtgccctgctagtctctgttctctctatgagtgggaagtgcaacccgtc 3227649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 267
Target Start/End: Original strand, 15274347 - 15274451
Alignment:
163 gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtccttt 262  Q
    |||||||| |||| |||||| |||||||| ||||| ||||| |||||||| ||||||||||  || ||  | |||| ||||||||||||| | ||||| |    
15274347 gtggtggacagagtgaaacttttagcttgtaagtgattcctagctaagtgtcctgctagttcatgttctctctatgagtgggaggtgcagtctgtcctgt 15274446  T
263 gttgg 267  Q
    |||||    
15274447 gttgg 15274451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 12834167 - 12833951
Alignment:
1 atccctttaggtttagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttattt 100  Q
    |||||| | ||| |||||| |||||||||||||||||| || |||||||||||||| |||||||||||||||||| ||| |||||||| |||||||||||    
12834167 atccctatgggtctagcccagcagttcctttcctttacaggtttaggtagggggaatcgtgttagaataggtttatttattgtttggcatgctgttattt 12834068  T
101 ggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaa-actcttagcttggaagtggt 199  Q
    ||||||||||||  | ||||||||| ||| |||||||| ||||| ||| || ||||||| ||||||||||||||||    ||||||||||||| ||||||    
12834067 ggaccatctggatgttccggaatgatcttattttttctagtggtacccttaatgaggggcctgtggtggatagagcctctactcttagcttgggagtggt 12833968  T
200 tcctggctaagtgccct 216  Q
    ||||| |||||| ||||    
12833967 tcctgactaagtaccct 12833951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 90 - 251
Target Start/End: Original strand, 51921 - 52082
Alignment:
90 tgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagct 189  Q
    |||||||||||||||||||||||| ||||| ||||||||| | |||||||||||  |||  || |||| | || |||||||| |||| ||||||||||||    
51921 tgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctggtggctccctcagagaggagcctatggtggatcgagctaaactcttagct 52020  T
190 tggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgca 251  Q
    ||||||||||||||||||||||| | ||||||||  ||| | || |||| ||||||||||||    
52021 tggaagtggttcctggctaagtgtcttgctagttcttgcactttatatgagtgggaggtgca 52082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 9557533 - 9557358
Alignment:
93 tgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgg 192  Q
    ||||||||||||||||| ||| ||||| ||||||||| ||| | |||||||  ||||| ||||  |||| ||||||||| | || ||| |||||||||||    
9557533 tgttatttggaccatcttgacgtcccgaaatgaccttatttctgctggtggcacccattgtgataggtcggtggtggatggggcaaaattcttagcttgg 9557434  T
193 aagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggc 268  Q
    ||||| |||||| ||||||| |||||||| | |||| | | | ||| |||||||||||||||||||||||| ||||    
9557433 aagtgattcctgactaagtgtcctgctagctcctgcacttatcatgagtgggaggtgcagcccgtcctttgctggc 9557358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 9755759 - 9755699
Alignment:
163 gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt 223  Q
    |||||||| | || ||||||||||| |||||||||||| | ||||||||||||||||||||    
9755759 gtggtggacaaagtgaaactcttagtttggaagtggtttcgggctaagtgccctgctagtt 9755699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 19290215 - 19290332
Alignment:
81 tgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaa 180  Q
    |||||| | |||||||||||| || |||||||| ||||||||||||||| | |||  |||||| |  ||  ||| || | || ||||||||||||  |||    
19290215 tgtttgacatgctgttatttgaacaatctggacatcccggaatgaccttatgtttggtggtggcgtacagcgtgtggagcctttggtggatagagaaaaa 19290314  T
181 ctcttagcttggaagtgg 198  Q
    ||||||| ||| ||||||    
19290315 ctcttagtttgaaagtgg 19290332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 68 - 266
Target Start/End: Original strand, 43411419 - 43411617
Alignment:
68 taggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggt 167  Q
    |||||||||||   ||||| |||||| ||||||||||||||||||| |||| |||||||||||| |||||||||||||| | | ||| || |||| ||||    
43411419 taggtttacttctggtttgacgtgctattatttggaccatctggacgtcccagaatgaccttgtgttttctggtggtgctcgtggtgtggagtctttggt 43411518  T
168 ggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttg 266  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| |||||||| | |||| | | | ||| |||||||||||||||||||||||||||    
43411519 ggatagagcgaaactcttagcttgaaagtgtttcctggctaagtgtcctgctagctcctgcacttatcatgagtgggaggtgcagcccgtcctttgttg 43411617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 258
Target Start/End: Original strand, 10994301 - 10994527
Alignment:
32 cctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgt 131  Q
    |||||||| | |||||| |||||| | | |||||  ||||||| |||  |||||||| ||||||||| |||||||| |||    |||| ||||||||| |    
10994301 cctttacgtgtttaggtggggggaggagagttaggttaggtttgctttttgtttggcatgctgttatctggaccatttgggagacccgtaatgaccttat 10994400  T
132 tttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctcc 231  Q
     ||| |||||||||  |   |||||  | | |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| | | ||     
10994401 ctttgctggtggtgttctccgtgagaagccagtggtggatagagttaaactcttagcttggaagtggttcctggctaagtgccctgctagttcccgttct 10994500  T
232 ttttatgggtgggaggtgcagcccgtc 258  Q
     | |||| |||||||||||||||||||    
10994501 ctctatgagtgggaggtgcagcccgtc 10994527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 29682553 - 29682758
Alignment:
14 tagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggac 113  Q
    |||||| |||||| | | ||||||||||||| || ||||||| | | |||||  ||||||| |||  |||||||| || ||||||||||||||| ||| |    
29682553 tagcccagcagtttcatgcctttacggggttggg-agggggaggagagttaggttaggtttgcttcttgtttggcatgttgttatttggaccatttgggc 29682651  T
114 ttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgc 213  Q
     ||||||||||||||| | ||| |||||||||| |   | || | |   |||||||||||||  ||||||||||||| ||||||||||| |||||||  |    
29682652 gtcccggaatgaccttatctttgctggtggtgctctccgagatgagctagtggtggatagagttaaactcttagcttagaagtggttccaggctaagcac 29682751  T
214 cctgcta 220  Q
    |||||||    
29682752 cctgcta 29682758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 41074658 - 41074545
Alignment:
161 ctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcct 260  Q
    |||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| | || | | ||| ||| |||| ||||||||||||| ||    
41074658 ctgtggtggacaaagcgaaactcttagcttgaaagtggttcctggctaagtgccctgctag-tccttcacttttcatgagtggaaggtgcagcccgttct 41074560  T
261 ttgttggcaacggta 275  Q
     || ||||| |||||    
41074559 gtgctggcatcggta 41074545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 328 - 462
Target Start/End: Original strand, 42032899 - 42033031
Alignment:
328 ctttgcctctacctatccagcctgtcttcttgggtctctccttgcgcttttccttgctgggtgtgctggttgtgacggggccctttccgggggccatttt 427  Q
    |||||||||||||| |||||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||  |||||||||| |||||||||||||    
42032899 ctttgcctctacctttccagcctgtcttcttg--tctctccttgcgcttttccttgttgggtgcgctggttgtggtggggcccttttcgggggccatttt 42032996  T
428 ggtgttggttttcttcttctttttcttggtgtgtt 462  Q
    |||||||||||||||||||||||||||||||||||    
42032997 ggtgttggttttcttcttctttttcttggtgtgtt 42033031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 42032730 - 42032845
Alignment:
160 tctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcc 259  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| |||||||    
42032730 tctgtggtgaatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctacttcctgctccttttatgagtgggaggtgcaacccgtcc 42032829  T
260 tttgttggcaacggta 275  Q
    ||||||||||||||||    
42032830 tttgttggcaacggta 42032845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 82 - 269
Target Start/End: Original strand, 41926939 - 41927126
Alignment:
82 gtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaac 181  Q
    ||||||| |||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||| | | | |||| | ||||||||||||||||||| |    
41926939 gtttggcatgctgttatttggaccatttggacttctcggaatgatcttattttttctggtggtgctcttcgagaggagcctgtggtggatagagcgaatc 41927038  T
182 tcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggca 269  Q
    ||||||||||||||||||||||||||||||||| ||| | || |||||  || |||| ||||||| |||| ||| |||| ||||||||    
41927039 tcttagcttggaagtggttcctggctaagtgccgtgcaaattcctgctttttctatgagtgggagatgcaccccttcctgtgttggca 41927126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 42241471 - 42241217
Alignment:
14 tagcccggcagttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggac 113  Q
    |||||| |||||| |  ||||| ||||| |||||| |||||||| | |||||| ||||||| || | |||||| | |||||||||||| |||||||||||    
42241471 tagcccagcagtttccgtccttcacgggattaggtggggggaagagcgttagactaggtttgctcattgtttgacatgctgttatttgaaccatctggac 42241372  T
114 ttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgc 213  Q
     ||| | || |||||| ||||| ||||||| ||||   |||||| | || ||||||||| ||||||||||||||||||||||||||||||||| ||| ||    
42241371 atccagaaacgaccttattttt-ctggtggcgccctccgtgaggagcctttggtggataaagcgaaactcttagcttggaagtggttcctggcgaagcgc 42241273  T
214 cctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggca 269  Q
     || |||||| |||| | |    || |||||||||||| |||||||| || |||||    
42241272 tctactagttcctgcacttaccttgagtgggaggtgcaacccgtcctgtgctggca 42241217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 37 - 228
Target Start/End: Complemental strand, 4040540 - 4040348
Alignment:
37 acggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgtttttt 136  Q
    ||||| |||||| |||||||| |||||||  ||||||| || | |||||||| || |||||| |||||||||||||| ||| | || |||||| ||||||    
4040540 acgggattaggtggggggaagagtgttaggctaggtttgctcattgtttggcatgttgttatctggaccatctggacatccagaaacgaccttatttttt 4040441  T
137 ctggtggtgcccatagtgaggggtctgtggt-ggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgc 228  Q
    |||||||  ||  | | |||| |||| |||| |||||||||||||| |||||||||||||| ||||||||| ||| |  ||||||||| ||||    
4040440 ctggtggcacctttcgagaggagtctttggtgggatagagcgaaacccttagcttggaagtagttcctggcgaagcgttctgctagttcctgc 4040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 265
Target Start/End: Original strand, 24604742 - 24604939
Alignment:
68 taggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggt 167  Q
    ||||||| |||  |||||||| || ||| ||||| ||||| ||||| ||  ||||||||||  ||||| |||||||| |||   | |||| |   |||||    
24604742 taggtttgcttcttgtttggcatgatgtcatttgtaccatttggacgtctaggaatgacctgatttttgctggtggtaccctccgagaggagctggtggt 24604841  T
168 ggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgtt 265  Q
    |||||||||||||||||||| ||| ||||||||| |||||||||| ||||||||||| | ||| | | ||| |||||||||||||||| |||| ||||    
24604842 ggatagagcgaaactcttagattgaaagtggttcttggctaagtggcctgctagttttttctcttatcatgagtgggaggtgcagcccatcctatgtt 24604939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 152 - 269
Target Start/End: Complemental strand, 34152124 - 34152007
Alignment:
152 gtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgca 251  Q
    |||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||   |||| |||| | ||| ||| ||||||||||||    
34152124 gtgaggagcctgttgtggatagagctaaactcttagcttggaagtggttcctggctaagcgccctagcagttcctgcacttttcatgagtgggaggtgca 34152025  T
252 gcccgtcctttgttggca 269  Q
     ||| |||||||||||||    
34152024 acccatcctttgttggca 34152007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 32074017 - 32073929
Alignment:
172 agagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcct 260  Q
    |||| ||||||||||| ||||||||| || ||||||||||| ||| |||||| |||||||||||||| |||||||| ||||||||||||    
32074017 agagtgaaactcttagtttggaagtgatttctggctaagtgtcctactagttcctgctccttttatgagtgggaggcgcagcccgtcct 32073929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 81 - 212
Target Start/End: Complemental strand, 7656977 - 7656846
Alignment:
81 tgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaa 180  Q
    |||||| | |||||| |||| ||||||||  || |||||||||||||| |||||||| ||||| |  |   |||||| | ||||||||||||||| ||||    
7656977 tgtttgacatgctgtcatttagaccatctaaacgtcccggaatgacctagttttttcaggtggcgtactccgtgaggagcctgtggtggatagagtgaaa 7656878  T
181 ctcttagcttggaagtggttcctggctaagtg 212  Q
    ||||||  |||||||||||||||  |||||||    
7656877 ctcttaatttggaagtggttcctaactaagtg 7656846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 265
Target Start/End: Complemental strand, 2074897 - 2074795
Alignment:
163 gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtccttt 262  Q
    |||||||||| ||  |||||||||| || ||||| ||||| |||||||||||||||||||| ||| ||  | |||| |||||||||||| |||||||| |    
2074897 gtggtggatatagttaaactcttagttttgaagttgttccaggctaagtgccctgctagttcctgttctctctatgagtgggaggtgcaacccgtcctgt 2074798  T
263 gtt 265  Q
    |||    
2074797 gtt 2074795  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 36650524 - 36650457
Alignment:
163 gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctc 230  Q
    |||||||| ||||  ||||||||||||||| ||||||||| ||||||||| | |||||||| ||||||    
36650524 gtggtggacagagttaaactcttagcttgggagtggttccgggctaagtgtcttgctagttcctgctc 36650457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 38492803 - 38492761
Alignment:
161 ctgtggtggatagagcgaaactcttagcttggaagtggttcct 203  Q
    |||||||||||| |||||||||||||||||| |||||||||||    
38492803 ctgtggtggataaagcgaaactcttagcttgaaagtggttcct 38492761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 1762224 - 1762039
Alignment:
25 ttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatg 124  Q
    ||||||||||||| | | |||| |||||||||||||||||||||| ||||||||  |||||||| || ||||||||||||||||||||| ||| ||||||    
1762224 ttcctttcctttatgagtttagatagggggaagcgtgttagaatatgtttacttcttgtttggcatgttgttatttggaccatctggacgtcctggaatg 1762125  T
125 accttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaag 210  Q
    | ||| |||||| |||||| | ||||||||||| |  | || | ||||||||||||||||||||||||||||||||| ||||||||    
1762124 agcttattttttttggtggcgtccatagtgaggtgcatttgatagatagagcgaaactcttagcttggaagtggttcatggctaag 1762039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 257
Target Start/End: Complemental strand, 26982239 - 26982031
Alignment:
49 agggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgccc 148  Q
    ||||||||| | ||||| |||||||| |||   ||||||| |||||| |||| |||| |   ||||||  | ||| ||||| |||| ||||||||  |||    
26982239 agggggaagagagttaggataggtttgcttctggtttggcatgctgtcatttagaccgttctgacttctagaaataaccttattttctctggtggcaccc 26982140  T
149 atagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggt 248  Q
     | |||||| | |||||||||||||||  |||||||||||||||||||||||| |||||||||||||||| |||| |||| ||| | ||| |||||||||    
26982139 ttcgtgaggagcctgtggtggatagagtaaaactcttagcttggaagtggttcttggctaagtgccctgcaagttcctgcacctatcatgagtgggaggt 26982040  T
249 gcagcccgt 257  Q
     ||||||||    
26982039 tcagcccgt 26982031  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 4778030 - 4778134
Alignment:
161 ctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcct 260  Q
    |||||||||||||||  |||||||||| |||||||||||||| ||||| |||||||||||||  ||||||  | |||| |||||||||||||||||||||    
4778030 ctgtggtggatagagttaaactcttagtttggaagtggttccaggctaggtgccctgctagtccctgctctctctatgagtgggaggtgcagcccgtcct 4778129  T
261 ttgtt 265  Q
     ||||    
4778130 gtgtt 4778134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 93 - 269
Target Start/End: Original strand, 34213078 - 34213254
Alignment:
93 tgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgg 192  Q
    |||||| |||||||| ||||| ||||  || |||||| |||| |||||||| || |   ||||||   |||| |||||||||| ||||||||||||||||    
34213078 tgttatatggaccatttggacgtcccaaaacgaccttattttctctggtggcgctctccgtgaggaacctgttgtggatagagtgaaactcttagcttgg 34213177  T
193 aagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggca 269  Q
    ||||||||| |||||||||||| ||||||||  ||| | | | | | ||| ||||||||||||||||| ||||||||    
34213178 aagtggttcatggctaagtgccatgctagttcatgcacttatcacgagtgtgaggtgcagcccgtcctgtgttggca 34213254  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 163 - 267
Target Start/End: Complemental strand, 2833394 - 2833286
Alignment:
163 gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctag----tttctgctccttttatgggtgggaggtgcagcccgtc 258  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||    || ||||||  | |||| |||||||||||||||||||    
2833394 gtggtagatagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagctagttcctgctctctctatgagtgggaggtgcagcccgtc 2833295  T
259 ctttgttgg 267  Q
    || ||||||    
2833294 ctatgttgg 2833286  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 41640824 - 41640926
Alignment:
163 gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtccttt 262  Q
    |||||||| ||||  ||||||||| ||||||||||||| | |||||||||||||||||||| ||||||    |||| ||||||||||||||||||||| |    
41640824 gtggtggacagagttaaactcttaacttggaagtggtttcgggctaagtgccctgctagttcctgctctccctatgagtgggaggtgcagcccgtcctgt 41640923  T
263 gtt 265  Q
    |||    
41640924 gtt 41640926  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 1045466 - 1045406
Alignment:
163 gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt 223  Q
    ||||||||||| |  ||||||| ||||||||||||||||||||||||||||||||||||||    
1045466 gtggtggatagggttaaactctcagcttggaagtggttcctggctaagtgccctgctagtt 1045406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 82 - 275
Target Start/End: Complemental strand, 50655250 - 50655057
Alignment:
82 gtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaac 181  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||||||| | ||||||||||| ||||  || |||| ||||||| |||||   || ||||    
50655250 gtttggcatgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctggtggcgccctcagagaggagtctgtgatggatcaggctaaac 50655151  T
182 tcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta 275  Q
    ||||||||||||||||||||||||||||||| ||||||||||  ||||  ||  ||| |||||||||||| || |||||||||||||| |||||    
50655150 tcttagcttggaagtggttcctggctaagtgtcctgctagttcttgctttttccatgagtgggaggtgcaacctgtcctttgttggcagcggta 50655057  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 90 - 269
Target Start/End: Complemental strand, 30251565 - 30251386
Alignment:
90 tgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagct 189  Q
    |||||||||||||||||| ||||| ||| | || |||||| |||| |||| ||| || |   |||||| ||||||||||||||||| ||||||||| |||    
30251565 tgctgttatttggaccatttggacgtcctgaaacgaccttattttctctgttggggctctccgtgaggagtctgtggtggatagagtgaaactcttggct 30251466  T
190 tggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggca 269  Q
    || |||||||||||||||||||||||||  ||||  |||||  || ||| |||||||||| |||| |||||||| |||||    
30251465 tgaaagtggttcctggctaagtgccctggaagttcttgctctgttcatgagtgggaggtgtagccggtcctttgctggca 30251386  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 275
Target Start/End: Original strand, 19469578 - 19469759
Alignment:
93 tgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgg 192  Q
    |||||||||||||||||| |||||| |||||||| || | ||| ||||||| ||||||  ||||| |  ||||||||||||||| ||  |||||||||||    
19469578 tgttatttggaccatctgaacttcctggaatgacattttatttgctggtggcgcccattctgaggagcatgtggtggatagagcaaagttcttagcttgg 19469677  T
193 aagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta 275  Q
    ||||||||||| | ||||||  ||||||||| |||| | | | ||| |||||||||| |||| |||||||||||||| |||||    
19469678 aagtggttcctagttaagtg-tctgctagttcctgcacttatcatgagtgggaggtgtagcctgtcctttgttggcatcggta 19469759  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 267
Target Start/End: Complemental strand, 45068359 - 45068115
Alignment:
23 agttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaa 122  Q
    ||||||| || |||||||| |||||| |||||||| | || ||  ||||||| |||  |||||| | || | ||||||||| ||||||||| |||| |||    
45068359 agttcctgtcttttacgggtttaggtggggggaagagagtgaggttaggtttgcttcttgtttgacatgtttttatttggaacatctggacgtccctgaa 45068260  T
123 tgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagt 222  Q
     |||||| | |||||| || |  | | |  ||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||    
45068259 cgaccttttgttttctagttgcactcttcatgaggagcctgtagtggatagagctaaactcttagcttggaagtggttcctggctaagtgccctggcagt 45068160  T
223 ttctgctccttttatgggtgggaggtgcagcccgtcctttgttgg 267  Q
    | || | | | | ||| | |||||||||| |||||||||||||||    
45068159 tcctacacttatcatgagggggaggtgcaacccgtcctttgttgg 45068115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 103 - 275
Target Start/End: Complemental strand, 23012495 - 23012323
Alignment:
103 accatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcc 202  Q
    ||||| ||||| || ||||| |||||| |||| ||||||||||| |   |||||| | | ||||||||||||| ||||||||||| |||||| ||||||     
23012495 accatttggacgtctcggaacgaccttattttctctggtggtgctctctgtgaggagcccgtggtggatagagtgaaactcttagtttggaattggttca 23012396  T
203 tggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttggcaacggta 275  Q
    ||||||||||   ||||||||||||| | | | |||  ||||||||||||| |||||| ||||| || |||||    
23012395 tggctaagtgttgtgctagtttctgcacttatcatgaatgggaggtgcagcacgtcctgtgttgacatcggta 23012323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 24 - 268
Target Start/End: Complemental strand, 12843164 - 12842920
Alignment:
24 gttcctttcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaat 123  Q
    ||||||||  |||| ||| |||||  |||| ||| | ||||| |||||||| |||   ||||||| |  |||||| |||||||| |||||||||||||||    
12843164 gttcctttattttatgggcttaggagggggaaagagagttaggataggtttgcttctggtttggcattttgttatctggaccatttggacttcccggaat 12843065  T
124 gaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt 223  Q
    |||||| |||||||||| |  ||||  || ||||    | ||||||| ||||| |||||||||  |||||||||||||||| ||||||  | |||||||     
12843064 gaccttattttttctggcgacgccctcagagaggatcttatggtggagagagctaaactcttactttggaagtggttcctgactaagtatcatgctagtc 12842965  T
224 tctgctccttttatgggtgggaggtgcagcccgtcctttgttggc 268  Q
     |||||||| |||   ||  ||||||||| ||||||| |||||||    
12842964 cctgctcctattaccagttagaggtgcagtccgtcctgtgttggc 12842920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 24065196 - 24065097
Alignment:
161 ctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcct 260  Q
    ||||||||||||||| |||||||||| | |||||||||||| ||||||||| ||||||||||| ||| |  | |||||  |||||||| || ||||||||    
24065196 ctgtggtggatagagtgaaactcttaacctggaagtggttcatggctaagtaccctgctagttcctgttgttattatgaatgggaggtacaacccgtcct 24065097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 223
Target Start/End: Complemental strand, 48309846 - 48309657
Alignment:
34 tttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttt 133  Q
    ||||| ||||||||  |||||||| | |||||  ||||||| |||  |||||||| |  ||||||||||||||| ||  | |||| |||||||||| | |    
48309846 tttacagggttaggaggggggaagagagttaggttaggtttgcttcttgtttggcatattgttatttggaccatttgagcatcccagaatgaccttatct 48309747  T
134 tttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt 223  Q
    || |||||||    |   | |||| | | ||||||||||||| |||||||||||||||||||| ||||| ||||||||  ||||||||||    
48309746 ttgctggtggcttactccgagaggagccagtggtggatagagtgaaactcttagcttggaagtcgttccgggctaagtttcctgctagtt 48309657  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 4866794 - 4866838
Alignment:
178 aaactcttagcttggaagtggttcctggctaagtgccctgctagt 222  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
4866794 aaactcttagcttggaagtggttcctggctaagtgccttgctagt 4866838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 44616887 - 44616698
Alignment:
35 ttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttg---- 130  Q
    ||||||| |||||| |||||||||| |||||| ||||||| ||    |||| || || ||||||||||| ||||||||| | | |||||||||||         
44616887 ttacgggcttaggtggggggaagcgagttagattaggtttgctcctggttttgcctgttgttatttggatcatctggacgtgctggaatgacctttattt 44616788  T
131 ttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgcta 220  Q
    ||||||||||  | |||| | |||||| | || ||| |||||||| ||| ||||||||||| |||||| || |||||||| ||| |||||    
44616787 ttttttctggaagcgcccttcgtgaggagcctatggcggatagagagaagctcttagcttgtaagtggctcatggctaagggccttgcta 44616698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 41650444 - 41650583
Alignment:
82 gtttggcgtgctgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaac 181  Q
    ||||||| |||||| ||||||||||| ||||| ||||  |||||| |  ||||||||||||| || | | | || | || ||||||||||||||||||||    
41650444 gtttggcatgctgtcatttggaccatttggacgtcccaaaatgacttgattttttctggtggcgctcttggagaagtgtatgtggtggatagagcgaaac 41650543  T
182 tcttagcttggaagtggttcctggctaagtgccctgctag 221  Q
    |||||||||||||||||||||||||||||||| |||||||    
41650544 tcttagcttggaagtggttcctggctaagtgctctgctag 41650583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 93 - 262
Target Start/End: Complemental strand, 27639613 - 27639444
Alignment:
93 tgttatttggaccatctggacttcccggaatgaccttgttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgg 192  Q
    ||||||||||||||||||||||| |   |||||| || | ||| |||||||  |||||||||||  | |||||||||||||||| ||| |||||||||||    
27639613 tgttatttggaccatctggacttacataaatgactttatgtttgctggtggcacccatagtgagcagactgtggtggatagagcaaaattcttagcttgg 27639514  T
193 aagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtccttt 262  Q
    ||||||||| ||||||| || ||||||||||  ||| | | | ||| || ||||||||| ||||||||||    
27639513 aagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtaggaggtgcaacccgtccttt 27639444  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 3465528 - 3465354
Alignment:
31 tcctttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggacttcccggaatgaccttg 130  Q
    ||||| ||||| |||||| |||||||| |||||||  |||||||||| |  ||||| | || ||||||||||||||||| ||| ||| | || ||||||     
3465528 tccttcacgggattaggt-gggggaagagtgttaggctaggtttactcatcgtttgacatgttgttatttggaccatctagacatccagaaacgacctta 3465430  T
131 ttttttctggtggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttggaagtggttcctggc 206  Q
    |||||||||||||  ||  | | |||| |||| |||||||||||||||||||||||||||||||||| ||| ||||    
3465429 ttttttctggtggcacctttcgagaggagtctttggtggatagagcgaaactcttagcttggaagtgtttcttggc 3465354  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 167 - 269
Target Start/End: Original strand, 33861926 - 33862027
Alignment:
167 tggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctttgttg 266  Q
    ||||||||| |||||| || |||||||||||| ||| |||||||||||||| ||||| |||||| ||| ||| |||||||||| ||||||||||||| ||    
33861926 tggatagagtgaaact-ttggcttggaagtggctcccggctaagtgccctggtagttcctgctcttttcatgagtgggaggtgtagcccgtcctttgctg 33862024  T
267 gca 269  Q
    |||    
33862025 gca 33862027  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 16154664 - 16154585
Alignment:
34 tttacggggttaggtagggggaagcgtgttagaataggtttacttactgtttggcgtgctgttatttggaccatctggac 113  Q
    |||||||||||||| ||||||||| | |||||  ||||||| |||  | |||||| |||| ||||||||||||| |||||    
16154664 tttacggggttaggaagggggaagagagttaggttaggtttgcttcttatttggcatgctattatttggaccatttggac 16154585  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 39774290 - 39774337
Alignment:
82 gtttggcgtgctgttatttggaccatctggacttcccggaatgacctt 129  Q
    ||||||||| |||||||||||| ||||||||| |||||||| ||||||    
39774290 gtttggcgttctgttatttggatcatctggacgtcccggaacgacctt 39774337  T

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Target: scaffold0329 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 18521 - 18408
Alignment:
162 tgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtttctgctccttttatgggtgggaggtgcagcccgtcctt 261  Q
    |||||||||||||||||||||| ||| ||| ||||| |||  |||||||||||||||||||| |||| | | | ||| |||||||||||| ||||| ||     
18521 tgtggtggatagagcgaaactcatagtttgaaagtgattctgggctaagtgccctgctagttcctgcacttatcatgagtgggaggtgcaacccgttctg 18422  T
262 tgttggcaacggta 275  Q
    |||||||| |||||    
18421 tgttggcagcggta 18408  T

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Target: scaffold0042 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 83311 - 83252
Alignment:
164 tggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctagtt 223  Q
    ||||||||| ||  |||||||||||||||||||||||| || | ||||| ||||||||||    
83311 tggtggataaagtcaaactcttagcttggaagtggttcatgccgaagtgtcctgctagtt 83252  T

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