View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6713_low_7 (Length: 351)
Name: NF6713_low_7
Description: NF6713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6713_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 139 - 342
Target Start/End: Original strand, 16562381 - 16562591
Alignment:
| Q |
139 |
ggaaactcagttttcataatatgcatttggtttcaccaa-gtatgacgcatagccactaggctctgacaaattaaggcatacaattccttctctcctgga |
237 |
Q |
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| T |
16562381 |
ggaaactcagttttcataatatgcaattggtttcaccaatgtatgacgcatagccactaggctctgacaaattaaggcatacaattccttctctcctgga |
16562480 |
T |
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| Q |
238 |
gaggaaaatgccaagattgaaaataacaacagctc------attggcctcggaattttgttactggagtattattttaagctaataataaagccccacaa |
331 |
Q |
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| T |
16562481 |
gaggaaaatgccaaggttgaaaataacaacagctcattaatattggcctcggaattttgttactggagtattattttaagctaataataaagccccacaa |
16562580 |
T |
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| Q |
332 |
taaagtatatt |
342 |
Q |
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| T |
16562581 |
taaagtatatt |
16562591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 16561735 - 16561797
Alignment:
| Q |
16 |
cactaaaccctagtcatataccattaatgaattgagctaaaaaaggacacaattgtattaacc |
78 |
Q |
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| T |
16561735 |
cactaaaccctagtcctataccattaatgaattgagctaaaaaaggacacaattgtattaacc |
16561797 |
T |
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