View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6713_low_8 (Length: 324)
Name: NF6713_low_8
Description: NF6713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6713_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 309
Target Start/End: Original strand, 35517949 - 35518256
Alignment:
| Q |
13 |
atcagagaggaaacaccaacaataggttcgaaccaagtggctagaagagattttgacaagttatgtagaaatgttagacaatataactttacaatcctcc |
112 |
Q |
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| T |
35517949 |
atcagaggggaaacaccaacaataggttcgaaccaagtggctagaagagattttgacaagttatgtagaaatgttagacaatataactttacaatcctcc |
35518048 |
T |
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| Q |
113 |
accaactcaact-----tcccatgcaaacaacttttttctccaactctaacaaccttcctcaaatcctttacctaacaccatatcattcacataaacatt |
207 |
Q |
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| T |
35518049 |
accaactcaactcaacctcccatgcaaacaacttttttctccaactctaacaaccttcctcaaatcctttacgtaacaccatatcattcacataaacatt |
35518148 |
T |
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| Q |
208 |
tttctcc------agattaaacaacctactaaaacgcttttttaccacatcctctaccatccatggctcgtgtcaaaacaacttactatccttccatatt |
301 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35518149 |
tttctccaaggctagattaaacaacctactaaaacgcttttttaccacatcctctaccatccatggctcgtgtcaaaacaacttactatcattccatatt |
35518248 |
T |
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| Q |
302 |
ttattagt |
309 |
Q |
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|||||||| |
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| T |
35518249 |
ttattagt |
35518256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 212
Target Start/End: Original strand, 28827075 - 28827206
Alignment:
| Q |
82 |
aatgttagacaatataactttacaatcctccac-caactcaacttcccatgcaaacaacttttttctccaactctaacaaccttcctcaaatcctttacc |
180 |
Q |
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|||||||||||||| ||| |||| ||||||| ||||| ||| ||||| ||| || ||| ||||||||||| |||||||| |||| | || ||||| |
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| T |
28827075 |
aatgttagacaataaaaccctacactcctccaaacaactgaacctcccaaataaataaatttattctccaactccaacaacctccctctataccattacc |
28827174 |
T |
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| Q |
181 |
taacaccatatcattcacataaacatttttct |
212 |
Q |
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| T |
28827175 |
taacatcatacccttcacataaacatttttct |
28827206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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