View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6715_high_2 (Length: 514)
Name: NF6715_high_2
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6715_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 491
Target Start/End: Complemental strand, 7937228 - 7936775
Alignment:
| Q |
19 |
ataacaactaattttccatttctccaccaaaaatatactatcattcttagctgtgt--actgttactaaacagtgggccatgcacgtgtttctctcttca |
116 |
Q |
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| T |
7937228 |
ataacaactaattttccatttctccaccaaaaatatact--cattcttagctgtgtgtaccgttactaaacagtgggccatgcacgtgtttctctcttca |
7937131 |
T |
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| Q |
117 |
cttcacaacatcatcatcatttactactactcccactcctttataatcaaaccttaaccctcccattttctcatcaccattcactttctctcttcatttt |
216 |
Q |
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| T |
7937130 |
cttcacaacatcatcatcatttactactactcccactcctttataatcaaaccttaaccctcccattttctcatcaccattcac-------------ttt |
7937044 |
T |
|
| Q |
217 |
tcattgagacattcatcaaacactttcaccaaaatggccaaacttggaaaactaacaatgtttaagtcagctatcaaaagatggccttcattaaccaaac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
7937043 |
tcattgagacattcatcaaacactttcaccaaaatggccaaacttggaaaattaacaaagcttaagtcagctatcaaaagatggccttcattaaccaaac |
7936944 |
T |
|
| Q |
317 |
tcagccgcaacaatagctctgtctcagcctcaaccaagcaacatgaacaagaaaaagaacttcatgctgtctatgtcggaaagtcgcggcgacaatacct |
416 |
Q |
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|||||||||||||||||||| |||| |||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7936943 |
tcagccgcaacaatagctctatctcttcctcctccaagc------aacaagaacaagagcttcatgctgtctatgtcggaaagtcgcggcgacaatacct |
7936850 |
T |
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| Q |
417 |
cgtgaactccgatgtcattcaacatcctgtgtttcaggagctggtggatagatcttcttgtgatgatggtgttgt |
491 |
Q |
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| T |
7936849 |
tgtgaactccaatgttgttcaacaccctgtgtttcaggagctagtggatagatcttcttgtgatgatggtgttgt |
7936775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 177 - 491
Target Start/End: Complemental strand, 7953023 - 7952709
Alignment:
| Q |
177 |
tcccattttctcatcaccattcactttctctcttcatttttcattgagacattcatcaaacactttcaccaaaatggccaaacttggaaaactaacaatg |
276 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
7953023 |
tcccattttctcatcacaattcactttctctcttcatttttcattgagacattcatcaaacactttcaccaaaatggccaaacttggaaaattaacaaag |
7952924 |
T |
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| Q |
277 |
tttaagtcagctatcaaaagatggccttcattaaccaaactcagccgcaacaatagctctgtctcagcctcaaccaagcaacatgaacaagaaaaagaac |
376 |
Q |
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| T |
7952923 |
cttaagtcagctatcaaaagatggccttcattaaccaaactcagccgcaacaatagctctgtctcatcctcaaccaagcaacatgaacatgaacaagaac |
7952824 |
T |
|
| Q |
377 |
ttcatgctgtctatgtcggaaagtcgcggcgacaatacctcgtgaactccgatgtcattcaacatcctgtgtttcaggagctggtggatagatcttcttg |
476 |
Q |
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| T |
7952823 |
ttcatgctgtctatgtcggaaagtcgcggcgacaatacctcgtgaactccgatgtcattcaacatcctgtgtttcaggagctggtggatagatcttcttg |
7952724 |
T |
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| Q |
477 |
tgatgatggtgttgt |
491 |
Q |
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| T |
7952723 |
tgatgatggtgttgt |
7952709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 7953101 - 7953053
Alignment:
| Q |
84 |
aaacagtgggccatgcacgtgtttctctcttcacttcacaacatcatca |
132 |
Q |
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|||||||||||||||||||||||| | |||||||||||| |||||||| |
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| T |
7953101 |
aaacagtgggccatgcacgtgttttgcccttcacttcacatcatcatca |
7953053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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