View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6715_high_21 (Length: 236)
Name: NF6715_high_21
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6715_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 6854663 - 6854881
Alignment:
| Q |
1 |
taaaacagcaaaattcacctgaccctttatcatcttcattttccttaactatgctacacataccatcgttgtcacactcataggtgcatgactcagcatc |
100 |
Q |
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| T |
6854663 |
taaaacagcaaaattcacctgaccctttatcatcttcattttccttaactatgctacacataccatcgttgtcacactcataggtgcatgactcagcatc |
6854762 |
T |
|
| Q |
101 |
atcttccttgtgcccaaagtaattagcagcagggtagagagtaaagaaaccaataagttcaccttcagaatctgcactgtcttcaataagcaacaaagat |
200 |
Q |
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| T |
6854763 |
atcttccttatgcccaaagtaattagcagcagggtatagagtaaagaaaccaataagttcaccttcagaatctgcactgtcttcaataagcaacaaagat |
6854862 |
T |
|
| Q |
201 |
gagcatgacacgtccatat |
219 |
Q |
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|||||||| || ||||||| |
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| T |
6854863 |
gagcatgatacatccatat |
6854881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 6861450 - 6861660
Alignment:
| Q |
9 |
caaaattcacctgaccctttatcatcttcattttccttaactatgctacacataccatcgttgtcacactcataggtgcatgactcagcatcatcttcct |
108 |
Q |
| |
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||||||||| |||||||||||||| |||| ||||||||| | | | ||||| |||| |||||||||||||||| |||||||||||||| || |||| |
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| T |
6861450 |
caaaattcatgtgaccctttatcattgtcatcttccttaaccaagtcatacatatcatctatgtcacactcataggtacatgactcagcatcctcctcct |
6861549 |
T |
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| Q |
109 |
tgtgcccaaagtaattagcagcagggtagagagtaaagaaaccaataagttcaccttcagaatctgcactgtcttcaataagcaacaaagatgagcatga |
208 |
Q |
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||||||| | |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| | |||||| ||||| |
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| T |
6861550 |
tgtgccctatgtaattagcagcagggtatagagtaaagaagccaataaggtcaccttcagaatctgcactgtcctcaataagcaatagagatgaacatga |
6861649 |
T |
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| Q |
209 |
cacgtccatat |
219 |
Q |
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|| ||||||| |
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| T |
6861650 |
tacatccatat |
6861660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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