View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6715_high_26 (Length: 206)
Name: NF6715_high_26
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6715_high_26 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 51680445 - 51680233
Alignment:
| Q |
1 |
gttaattaggctgaaattggttcaacccaccaaatccaactttgaaaattaattagtactactactacgttttgttcttatcactgaaatatttgtgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51680445 |
gttaattaggctgaaattggttcaacccaccaaatccaactttgaaaattaattagtactactactacgttttgttcttatcactgaaatatttgtgtca |
51680346 |
T |
|
| Q |
101 |
gctaagataag-------tttcaatataacaaaacaaacgtaaccaatgagaaagaacattagtgagtagtagtaattaatgagatcctacctaggctat |
193 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51680345 |
gctaaggtaagtttcaactttcaatccaacaaaacaaacgtaaccaatgagaaagaacattagtgagtagtagtaattaatgagatcctacctaggctat |
51680246 |
T |
|
| Q |
194 |
ggtaatagtatat |
206 |
Q |
| |
|
|||||||||||| |
|
|
| T |
51680245 |
agtaatagtatat |
51680233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University