View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6715_high_5 (Length: 447)
Name: NF6715_high_5
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6715_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 43 - 424
Target Start/End: Original strand, 31040628 - 31041009
Alignment:
| Q |
43 |
aaaacagagtaatgggaacagtggaagcactaaataagagtattcatagaaataatgaatacattgcagcaagaaagaaggtgtaatgaaaatagtggag |
142 |
Q |
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| T |
31040628 |
aaaacagagtaatgggaacagtggaagcactaaataagagtattcatagaaataatgaatacattgcagcaagaaagaaggtgtaatgaaaatagtggag |
31040727 |
T |
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| Q |
143 |
aagtaagagaggtgtgtaaggtatctgatgcaaagacttaatcaaataattgaaagaggttaaaattccagctcaggacagtagagacctcgaaaatcag |
242 |
Q |
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| T |
31040728 |
aagtaagagaggtgtgtaaggtatctgatgcaaagacttaatcaaataattgaaagaggttaaaattccagctcaggacaggagagacctcgaaaatcag |
31040827 |
T |
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| Q |
243 |
ctgatgctgaaagcaaggagacagactagacaagtcttgttcaatacgtcaaactacagctgggttgttatgtagagagagtgaaatctgcagaatctca |
342 |
Q |
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| T |
31040828 |
ctgatgctgaaagcaaggagacagactagacaagtcttgttcaatacgtcaaactacagctgggttgttatgtagagagagtgaaatctgcagaatctca |
31040927 |
T |
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| Q |
343 |
atggcagagaattgacaaagtgagagaagaaaaggagtgaaaagtagttgaatcctcgtgtaagctttataaggcacctaaa |
424 |
Q |
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| T |
31040928 |
atggcagagaattgacaaagtgagagaagaaaaggagtgaaaagtagttgaatcctcgtgtaagctttataaggcacctaaa |
31041009 |
T |
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