View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6715_high_7 (Length: 371)
Name: NF6715_high_7
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6715_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 52 - 219
Target Start/End: Original strand, 22694884 - 22695051
Alignment:
| Q |
52 |
aagtaacttttacaataatattaatactatcatttagtctccatcgccaaatattcttgtagtagctgagtatgttcctaagataccacttatcactccc |
151 |
Q |
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| T |
22694884 |
aagtgacttttacaataatattaatactatcatttagtctccatcgccaaatattcttgtagtagctgagtatgttcctaagataccacttatcacccca |
22694983 |
T |
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| Q |
152 |
acaataataatcaaagtgcaacttgttatctgaaaataaaataattaacatgaaatataattagtctc |
219 |
Q |
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| T |
22694984 |
acaataataatcaaaatgcaacttgttatctgaaaataaaataattaacatgaaatataattagtctc |
22695051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 22683337 - 22683447
Alignment:
| Q |
77 |
actatcatttagtctccatcgccaaatattcttgtagtagctgagtatgttcctaagataccacttatcactcccacaataataatcaaagtgcaacttg |
176 |
Q |
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| T |
22683337 |
actatcatttaatctccatcgccaaatattcttgaagtagctgagtatgttcctatgataccacttatcacccccacaataataatcaaaatgcaatttg |
22683436 |
T |
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| Q |
177 |
ttatctgaaaa |
187 |
Q |
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| T |
22683437 |
ttatctgaaaa |
22683447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 269 - 351
Target Start/End: Original strand, 22695249 - 22695331
Alignment:
| Q |
269 |
attattttataaagattgaaaatatatttaaccctaatataaaacaaagaatgatttcaaataagaggttattgaaatacctg |
351 |
Q |
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| T |
22695249 |
attattttataaggattgaaaatatatttaaccctaatataaaacaaagaatgatttcaaataagaggttattgaaatacctg |
22695331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 351
Target Start/End: Original strand, 36252177 - 36252253
Alignment:
| Q |
275 |
ttataaagattgaaaatatatttaaccctaatataaaacaaagaatgatttcaaataagaggttattgaaatacctg |
351 |
Q |
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|||||| |||| ||||||||| |||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||| |
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| T |
36252177 |
ttataaggattaaaaatatatctaactctaatataaaacaaagaatgattgtaaagaagagattattgaaatacctg |
36252253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 31559781 - 31559724
Alignment:
| Q |
289 |
aatatatttaaccctaatataaaacaaagaatgatttcaaataagaggttattgaaat |
346 |
Q |
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| T |
31559781 |
aatatatctaaccataatataaaacaaagaatgattgcaaagaagagattattgaaat |
31559724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 351
Target Start/End: Original strand, 31891052 - 31891106
Alignment:
| Q |
297 |
taaccctaatataaaacaaagaatgatttcaaataagaggttattgaaatacctg |
351 |
Q |
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||||| |||||||||||||||||||||| |||| |||| ||||||||||||||| |
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| T |
31891052 |
taaccttaatataaaacaaagaatgattgcaaagaagatattattgaaatacctg |
31891106 |
T |
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