View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6715_low_11 (Length: 352)
Name: NF6715_low_11
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6715_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 335
Target Start/End: Complemental strand, 31769056 - 31768727
Alignment:
| Q |
10 |
atgaacccgaacagagtgtgga----accactaaaccaagtttagtttcttttcattttcttttcgttagaactacttaaccactatatatggtgatggg |
105 |
Q |
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| T |
31769056 |
atgaacccgaacagagtgtggacggaaccactaaaccaagtttagtttcttttcattttcttttcgttagaactacttaaccactatatatgatgatggg |
31768957 |
T |
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| Q |
106 |
ccgaaatacannnnnnngagccatgtgttgtagcccgacctcgattagctttggtctggccctgttcaaatgaactttgagaatgtatatataattgagt |
205 |
Q |
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|||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31768956 |
ccgaaatacatttttttgggccatgtgttgtagcccgacctcgatgggctttggtctggccctgttcaaatgaactttgagaatgtatatataattgagt |
31768857 |
T |
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| Q |
206 |
gcacctcacgattggtattgaagagaaggacagtagtgaccacttataattgagtataatggattagggggtttgacagaagtcaataatgctatttgta |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31768856 |
gcacctcacgattggtattgaagagaaggacagtagtgaccacttataattgagtataatggattagggggtttgacagaagtcaataatgctatttgta |
31768757 |
T |
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| Q |
306 |
agctatcattcgacaacaaccatgtgtttt |
335 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31768756 |
agctatcattcgacaacaaccatgtgtttt |
31768727 |
T |
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